TreatCFM000934's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| cytosol | 0.008532181 | GO:0005829 |
| cis-zeatin biosynthesis | 0.008684734 | plantCyc |
| NADH repair | 0.008684734 | plantCyc |
| ADP-dependent NAD(P)H-hydrate dehydratase activity | 0.009815371 | GO:0052855 |
| ATP-dependent NAD(P)H-hydrate dehydratase activity | 0.009815371 | GO:0047453 |
| Zeatin biosynthesis | 0.012051943 | KEGG pathway |
| molybdate ion transmembrane transporter activity | 0.012264319 | GO:0015098 |
| UDP-N-acetylglucosamine diphosphorylase activity | 0.012264319 | GO:0003977 |
| AMP dimethylallyltransferase activity | 0.015405705 | GO:0009824 |
| nitrate transmembrane transporter activity | 0.015405705 | GO:0015112 |
| tRNA dimethylallyltransferase activity | 0.015405705 | GO:0052381 |
| nicotinamide nucleotide metabolic process | 0.017299691 | GO:0046496 |
| molybdate ion transport | 0.017299691 | GO:0015689 |
| UDP-N-acetylglucosamine biosynthetic process | 0.017299691 | GO:0006048 |
| UDP-glucose biosynthesis | 0.017351001 | plantCyc |
| nitrate transport | 0.018513216 | GO:0015706 |
| response to nitrate | 0.018513216 | GO:0010167 |
| oligopeptide transport | 0.018513216 | GO:0006857 |
| cytokinin biosynthetic process | 0.018513216 | GO:0009691 |
| stachyose degradation | 0.021651301 | plantCyc |
| sucrose biosynthesis II | 0.021651301 | plantCyc |
| trans-zeatin biosynthesis | 0.022355176 | plantCyc |
| tRNA modification | 0.028037349 | GO:0006400 |
| response to water deprivation | 0.036366549 | GO:0009414 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001044 | AT5G19150 (2.00E-131) | pfkB-like carbohydrate kinase family protein |
| CRO_T001308 | AT4G40060 (3.00E-35) | ATHB16|homeobox protein 16 |
| CRO_T001900 | AT1G80310 (3.00E-124) | MOT2|molybdate transporter 2 |
| CRO_T004714 | AT5G04440 (5.00E-89) | Protein of unknown function (DUF1997) |
| CRO_T007512 | AT3G56040 (0) | UGP3|UDP-glucose pyrophosphorylase 3 |
| CRO_T010231 | AT1G09900 (2.00E-44) | Pentatricopeptide repeat (PPR-like) superfamily protein |
| CRO_T015150 | AT5G20040 (2.00E-20) | ATIPT9|ISOPENTENYLTRANSFERASE 9 |
| CRO_T016062 | AT4G01897 (5.00E-41) | unknown protein |
| CRO_T026583 | AT2G28130 (1.00E-95) | unknown protein |
| CRO_T031130 | AT1G12110 (0) | ATNRT1|NITRATE TRANSPORTER 1; CHL1|CHLORINA 1; NPF6.3|NRT1/ PTR family 6.3; NRT1.1|nitrate transporter 1.1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000017 | Oxidative phosphorylation mitochondrion NADH dehydrogenase (ubiquinone) activity mitochondrial inner membrane heme transporter activity heme transport cytochrome-c oxidase activity respiratory chain cytochrome complex assembly hydrogen ion transmembrane transport ATP synthesis coupled electron transport heme binding aerobic respiration hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances aerobic electron transport chain electron transport chain generation of precursor metabolites and energy ATP synthesis coupled proton transport mitochondrial electron transport, NADH to ubiquinone hydrogen ion transmembrane transporter activity quinone binding photosynthetic electron transport in photosystem II succinate dehydrogenase activity electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity succinate dehydrogenase complex | details |
| TreatCFM000064 | clathrin vesicle coat secologanin and strictosidine biosynthesis Transcription_related, Transcription factor: NAC | details |
| TreatCFM000202 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds Protein_kinases_phosphatases, PPC:1.10.1: Receptor Like Cytoplasmic Kinase VI nitrogen compound metabolic process transferase activity, transferring acyl groups methyltransferase activity methylation | details |
| TreatCFM000313 | nicotinamide nucleotide metabolic process ATP-dependent NAD(P)H-hydrate dehydratase activity ADP-dependent NAD(P)H-hydrate dehydratase activity long-chain fatty acid metabolic process long-chain fatty acid-CoA ligase activity Fatty acid metabolism Transcription_related, Transcription factor: HB NADH repair cutin biosynthesis fatty acid β-oxidation II (peroxisome) long-chain fatty acid activation oleate biosynthesis I (plants) sporopollenin precursors biosynthesis stearate biosynthesis II (bacteria and plants) palmitate biosynthesis II (bacteria and plants) phosphatidylcholine acyl editing suberin monomers biosynthesis | details |
| TreatCFM000413 | Mitophagy - animal clathrin vesicle coat Fatty acid metabolism Phenylpropanoid biosynthesis very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II vesicle-mediated transport | details |
| TreatCFM000899 | Ubiquitin_Proteasome_system, E3 adaptor: DWD Protein_kinases_phosphatases, PPC:1.10.1: Receptor Like Cytoplasmic Kinase VI methyltransferase activity methylation | details |
| TreatCFM000903 | Transcription_related, Transcription factor: HB Glycosylphosphatidylinositol(GPI)-anchor biosynthesis GPI-anchor transamidase complex vesicle docking involved in exocytosis attachment of GPI anchor to protein chaperone-mediated protein folding amino acid transmembrane transport translational initiation RNA transport | details |
| TreatCFM000933 | cis-zeatin biosynthesis Zeatin biosynthesis trans-zeatin biosynthesis molybdate ion transmembrane transporter activity nitrate transmembrane transporter activity AMP dimethylallyltransferase activity enzyme activator activity tRNA dimethylallyltransferase activity oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor molybdate ion transport positive regulation of catalytic activity cytokinin biosynthetic process response to nitrate plastid translation ribosomal large subunit biogenesis glycerol ether metabolic process oligopeptide transport nitrate transport sulfate assimilation tRNA modification cellular response to oxidative stress chloroplast stroma response to water deprivation protein disulfide oxidoreductase activity Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TreatCFM001020 | long-chain fatty acid-CoA ligase activity FAD binding clathrin vesicle coat Fatty acid metabolism Transcription_related, Transcription factor: HB long-chain fatty acid metabolic process cutin biosynthesis fatty acid β-oxidation II (peroxisome) long-chain fatty acid activation oleate biosynthesis I (plants) palmitate biosynthesis II (bacteria and plants) phosphatidylcholine acyl editing sporopollenin precursors biosynthesis stearate biosynthesis II (bacteria and plants) suberin monomers biosynthesis | details |
| TreatCFM001021 | integral component of endoplasmic reticulum membrane integral component of Golgi membrane Transcription_related, Transcription regulator: PHD 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity 3'-phospho-5'-adenylyl sulfate transmembrane transport FAD binding carbohydrate transport secondary metabolite biosynthetic process | details |
| TreatCFM001556 | Mitophagy - animal Renin-angiotensin system Transcription_related, Transcription factor: NAC | details |
| TreatCFM001901 | Ubiquitin_Proteasome_system, E3 adaptor: DDB1 DNA replication proofreading nucleotide-excision repair, DNA gap filling base-excision repair, gap-filling Mitophagy - animal clathrin vesicle coat delta DNA polymerase complex nucleotide-excision repair red, far-red light phototransduction 3'-5'-exodeoxyribonuclease activity Phenylpropanoid biosynthesis cullin-RING ubiquitin ligase complex DNA biosynthetic process DNA-directed DNA polymerase activity damaged DNA binding coenzyme binding proteasome-mediated ubiquitin-dependent protein catabolic process nucleic acid phosphodiester bond hydrolysis vesicle-mediated transport | details |
Expression profiles
 Show details about module gene expression profiling |