TreatCFM000413's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Mitophagy - animal | 0.005581806 | KEGG pathway |
| clathrin vesicle coat | 0.015015511 | GO:0030125 |
| Fatty acid metabolism | 0.018522098 | KEGG pathway |
| Phenylpropanoid biosynthesis | 0.025638354 | KEGG pathway |
| very long chain fatty acid biosynthesis I | 0.025638354 | plantCyc |
| very long chain fatty acid biosynthesis II | 0.025638354 | plantCyc |
| vesicle-mediated transport | 0.04440579 | GO:0016192 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002856 | AT2G40060 (2.00E-18) | CLC2|clathrin light chain 2 |
| CRO_T007020 | AT2G32170 (4.00E-39) | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| CRO_T011094 | AT3G47360 (1.00E-12) | ATHSD3|HYDROXYSTEROID DEHYDROGENASE 3 |
| CRO_T016062 | AT4G01897 (5.00E-41) | unknown protein |
| CRO_T018601 | AT2G33590 (8.00E-114) | CRL1|CCR(Cinnamoyl coA:NADP oxidoreductase)-like 1 |
| CRO_T027809 | - | - |
| CRO_T032665 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000017 | Oxidative phosphorylation mitochondrion NADH dehydrogenase (ubiquinone) activity mitochondrial inner membrane heme transporter activity heme transport cytochrome-c oxidase activity respiratory chain cytochrome complex assembly hydrogen ion transmembrane transport ATP synthesis coupled electron transport heme binding aerobic respiration hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances aerobic electron transport chain electron transport chain generation of precursor metabolites and energy ATP synthesis coupled proton transport mitochondrial electron transport, NADH to ubiquinone hydrogen ion transmembrane transporter activity quinone binding photosynthetic electron transport in photosystem II succinate dehydrogenase activity electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity succinate dehydrogenase complex | details |
| TreatCFM000064 | clathrin vesicle coat secologanin and strictosidine biosynthesis Transcription_related, Transcription factor: NAC | details |
| TreatCFM000202 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds Protein_kinases_phosphatases, PPC:1.10.1: Receptor Like Cytoplasmic Kinase VI nitrogen compound metabolic process transferase activity, transferring acyl groups methyltransferase activity methylation | details |
| TreatCFM000313 | nicotinamide nucleotide metabolic process ATP-dependent NAD(P)H-hydrate dehydratase activity ADP-dependent NAD(P)H-hydrate dehydratase activity long-chain fatty acid metabolic process long-chain fatty acid-CoA ligase activity Fatty acid metabolism Transcription_related, Transcription factor: HB NADH repair cutin biosynthesis fatty acid β-oxidation II (peroxisome) long-chain fatty acid activation oleate biosynthesis I (plants) sporopollenin precursors biosynthesis stearate biosynthesis II (bacteria and plants) palmitate biosynthesis II (bacteria and plants) phosphatidylcholine acyl editing suberin monomers biosynthesis | details |
| TreatCFM000442 | cullin deneddylation Ubiquitin_Proteasome_system, DUB: JAMM COP9 signalosome Phenylpropanoid biosynthesis intracellular part ATP-dependent helicase activity coenzyme binding | details |
| TreatCFM000899 | Ubiquitin_Proteasome_system, E3 adaptor: DWD Protein_kinases_phosphatases, PPC:1.10.1: Receptor Like Cytoplasmic Kinase VI methyltransferase activity methylation | details |
| TreatCFM000914 | Transcription_related, Transcription factor: CPP mismatch repair complex Mismatch repair Transcription_related, Transcription regulator: SNF2 Mitophagy - animal mismatched DNA binding serine-type peptidase activity very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II Fatty acid metabolism Homologous recombination | details |
| TreatCFM000934 | cytosol cis-zeatin biosynthesis NADH repair ADP-dependent NAD(P)H-hydrate dehydratase activity ATP-dependent NAD(P)H-hydrate dehydratase activity Zeatin biosynthesis molybdate ion transmembrane transporter activity UDP-N-acetylglucosamine diphosphorylase activity AMP dimethylallyltransferase activity nitrate transmembrane transporter activity tRNA dimethylallyltransferase activity nicotinamide nucleotide metabolic process molybdate ion transport UDP-N-acetylglucosamine biosynthetic process UDP-glucose biosynthesis nitrate transport response to nitrate oligopeptide transport cytokinin biosynthetic process stachyose degradation sucrose biosynthesis II trans-zeatin biosynthesis tRNA modification response to water deprivation | details |
| TreatCFM000964 | cullin deneddylation COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM Phenylpropanoid biosynthesis coenzyme binding | details |
| TreatCFM001020 | long-chain fatty acid-CoA ligase activity FAD binding clathrin vesicle coat Fatty acid metabolism Transcription_related, Transcription factor: HB long-chain fatty acid metabolic process cutin biosynthesis fatty acid β-oxidation II (peroxisome) long-chain fatty acid activation oleate biosynthesis I (plants) palmitate biosynthesis II (bacteria and plants) phosphatidylcholine acyl editing sporopollenin precursors biosynthesis stearate biosynthesis II (bacteria and plants) suberin monomers biosynthesis | details |
| TreatCFM001021 | integral component of endoplasmic reticulum membrane integral component of Golgi membrane Transcription_related, Transcription regulator: PHD 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity 3'-phospho-5'-adenylyl sulfate transmembrane transport FAD binding carbohydrate transport secondary metabolite biosynthetic process | details |
| TreatCFM001206 | Ubiquitin_Proteasome_system, DUB: JAMM cullin deneddylation COP9 signalosome nitrogen compound metabolic process hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds Phenylpropanoid biosynthesis plastid coenzyme binding transferase activity, transferring acyl groups | details |
| TreatCFM001292 | Transcription_related, Transcription regulator: SWI/SNF-SWI3 spermine and spermidine degradation III starch biosynthesis regulation of SNARE complex assembly lysosome organization histone H3-K4 methylation endosome organization glycogen biosynthetic process transcription from RNA polymerase III promoter vesicle docking involved in exocytosis clathrin vesicle coat HOPS complex protein binding, bridging glucose-1-phosphate adenylyltransferase activity starch biosynthetic process DNA-directed RNA polymerase III complex RNA polymerase III activity ribonucleoside binding ATP-dependent peptidase activity DNA binding Autophagy - yeast | details |
| TreatCFM001378 | protein import into nucleus, docking protein import into nucleus, translocation cellular response to nitrogen starvation ribosomal protein import into nucleus Mismatch repair clathrin vesicle coat mismatch repair complex NLS-bearing protein import into nucleus autophagy nuclear membrane nuclear periphery Transcription_related, Transcription factor: MYB Apelin signaling pathway Phenylpropanoid biosynthesis very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II Fatty acid metabolism Ran GTPase binding nuclear localization sequence binding mismatched DNA binding | details |
| TreatCFM001556 | Mitophagy - animal Renin-angiotensin system Transcription_related, Transcription factor: NAC | details |
| TreatCFM001596 | chlorophyll cycle chlorophyll synthetase activity Porphyrin and chlorophyll metabolism chlorophyll biosynthetic process clathrin vesicle coat vesicle-mediated transport transferase activity, transferring glycosyl groups | details |
| TreatCFM001888 | 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity 3'-phospho-5'-adenylyl sulfate transmembrane transport Transcription_related, Transcription regulator: TRAF integral component of Golgi membrane clathrin vesicle coat integral component of endoplasmic reticulum membrane ATP-dependent peptidase activity Ubiquitin_Proteasome_system, E3 adaptor: BTB carbohydrate transport Plant hormone signal transduction vesicle-mediated transport endomembrane system | details |
| TreatCFM001901 | Ubiquitin_Proteasome_system, E3 adaptor: DDB1 DNA replication proofreading nucleotide-excision repair, DNA gap filling base-excision repair, gap-filling Mitophagy - animal clathrin vesicle coat delta DNA polymerase complex nucleotide-excision repair red, far-red light phototransduction 3'-5'-exodeoxyribonuclease activity Phenylpropanoid biosynthesis cullin-RING ubiquitin ligase complex DNA biosynthetic process DNA-directed DNA polymerase activity damaged DNA binding coenzyme binding proteasome-mediated ubiquitin-dependent protein catabolic process nucleic acid phosphodiester bond hydrolysis vesicle-mediated transport | details |
Expression profiles
 Show details about module gene expression profiling |