TreatCFM000399's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.003543114 | cazy family |
| Protein_kinases_phosphatases, PPC:2.1.2: Ankyrin Repeat Domain Kinase | 0.003543114 | kinase family |
| Nitrogen metabolism | 0.005190121 | KEGG pathway |
| plant sterol biosynthesis | 0.00730655 | plantCyc |
| sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity | 0.012037985 | GO:0047012 |
| one-carbon metabolic process | 0.014755341 | GO:0006730 |
| steroid biosynthetic process | 0.014755341 | GO:0006694 |
| carbonate dehydratase activity | 0.020046712 | GO:0004089 |
| 3-beta-hydroxy-delta5-steroid dehydrogenase activity | 0.020046712 | GO:0003854 |
| endoplasmic reticulum | 0.041093656 | GO:0005783 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000550 | AT4G32780 (2.00E-05) | phosphoinositide binding |
| CRO_T003843 | AT1G08080 (9.00E-71) | ACA7|alpha carbonic anhydrase 7; ATACA7|A. THALIANA ALPHA CARBONIC ANHYDRASE 7 |
| CRO_T003918 | AT2G45550 (7.00E-52) | CYP76C4|cytochrome P450, family 76, subfamily C, polypeptide 4 |
| CRO_T016949 | AT1G14000 (3.00E-63) | VIK|VH1-interacting kinase |
| CRO_T018419 | AT5G14450 (3.00E-118) | GDSL-like Lipase/Acylhydrolase superfamily protein |
| CRO_T022810 | AT5G02140 (1.00E-90) | Pathogenesis-related thaumatin superfamily protein |
| CRO_T023922 | AT2G44340 (7.00E-16) | VQ motif-containing protein |
| CRO_T027095 | AT2G33630 (0) | NAD(P)-binding Rossmann-fold superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000148 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc positive regulation of translational elongation translational frameshifting positive regulation of translational termination Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family Cysteine and methionine metabolism 1-aminocyclopropane-1-carboxylate oxidase activity ethylene biosynthesis I (plants) phosphatidylcholine acyl editing phospholipases lipase activity translational initiation ribosome binding triacylglycerol degradation translation elongation factor activity | details |
| TreatCFM000149 | Nitrogen metabolism jasmonate O-methyltransferase activity methyl indole-3-acetate interconversion carbonate dehydratase activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:1.4.1: Crinkly 4 Like Kinase Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family one-carbon metabolic process phosphatidylcholine acyl editing phospholipases triacylglycerol degradation | details |
| TreatCFM000546 | plant sterol biosynthesis Glycerolipid metabolism sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity 3-beta-hydroxy-delta5-steroid dehydrogenase activity transcription factor activity, transcription factor binding glycerol-3-phosphate 2-O-acyltransferase activity pollen sperm cell differentiation steroid biosynthetic process cutin biosynthetic process phosphatase activity Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII Transcription_related, Transcription factor: GRAS Ubiquitin_Proteasome_system, E3: U-box | details |
| TreatCFM000811 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc carbohydrate metabolic process glucosinolate metabolic process glutamine metabolic process glycosyl compound metabolic process one-carbon metabolic process Nitrogen metabolism scopolin beta-glucosidase activity carbonate dehydratase activity | details |
| TreatCFM000868 | jasmonate O-methyltransferase activity Transcription_related, Transcription factor: SAP methyl indole-3-acetate interconversion Transcription_related, Transcription factor: C2C2-GATA phosphatidylcholine acyl editing phospholipases triacylglycerol degradation methylation | details |
| TreatCFM000960 | flavin adenine dinucleotide binding sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity oxidation-reduction process steroid biosynthetic process plant sterol biosynthesis L-gulonolactone oxidase activity D-arabinono-1,4-lactone oxidase activity 3-beta-hydroxy-delta5-steroid dehydrogenase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.3.1: Receptor-like protein kinase redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 oxidoreductase activity, acting on CH-OH group of donors | details |
| TreatCFM001005 | sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity D-arabinono-1,4-lactone oxidase activity 3-beta-hydroxy-delta5-steroid dehydrogenase activity L-gulonolactone oxidase activity anthocyanidin modification (Arabidopsis) anthocyanin biosynthesis anthocyanin biosynthesis (delphinidin 3-O-glucoside) anthocyanin biosynthesis (pelargonidin 3-O-glucoside) brassinosteroids inactivation plant sterol biosynthesis quercetin glucoside biosynthesis (Allium) steroid biosynthetic process quercetin 3-O-glucosyltransferase activity quercetin 7-O-glucosyltransferase activity flavonoid glucuronidation oxidation-reduction process flavonoid biosynthetic process flavin adenine dinucleotide binding | details |
| TreatCFM001063 | plant sterol biosynthesis sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 3-beta-hydroxy-delta5-steroid dehydrogenase activity steroid biosynthetic process ribosomal large subunit assembly Protein processing in endoplasmic reticulum unfolded protein binding protein serine/threonine phosphatase activity response to stress | details |
| TreatCFM001077 | chromosome Cell cycle - yeast formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:4.1.5.1: WNK like kinase - with no lysine kinase plant sterol biosynthesis starch biosynthesis sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity DNA catabolic process, endonucleolytic steroid biosynthetic process chromosome organization Transcription_related, Transcription regulator: GNAT N-acetyltransferase activity 3-beta-hydroxy-delta5-steroid dehydrogenase activity cellular transition metal ion homeostasis iron-sulfur cluster binding metal ion transport | details |
| TreatCFM001187 | sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity ribose-5-phosphate isomerase activity chromosome organization steroid biosynthetic process pentose-phosphate shunt, non-oxidative branch Cell cycle - yeast 3-beta-hydroxy-delta5-steroid dehydrogenase activity cellulose catabolic process formation of glycosidic bonds, GlycosylTransferases: GTnc cellulase activity Calvin-Benson-Bassham cycle pentose phosphate pathway (non-oxidative branch) plant sterol biosynthesis Rubisco shunt starch biosynthesis adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc chromosome Transcription_related, Transcription factor: C2H2 carbohydrate binding | details |
| TreatCFM001672 | sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity Transcription_related, Transcription factor: Trihelix plant sterol biosynthesis steroid biosynthetic process 3-beta-hydroxy-delta5-steroid dehydrogenase activity Ribosome biogenesis in eukaryotes protein serine/threonine phosphatase activity protein dephosphorylation | details |
| TreatCFM001674 | Transcription_related, Transcription factor: Trihelix plant sterol biosynthesis sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 3-beta-hydroxy-delta5-steroid dehydrogenase activity steroid biosynthetic process ribosomal large subunit assembly Protein processing in endoplasmic reticulum unfolded protein binding protein serine/threonine phosphatase activity response to stress | details |
Expression profiles
 Show details about module gene expression profiling |