TreatCFM000476's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| aerobic respiration | 0.017959437 | GO:0009060 |
| electron transport chain | 0.017959437 | GO:0022900 |
| Oxidative phosphorylation | 0.017959437 | KEGG pathway |
| translational initiation | 0.03423751 | GO:0006413 |
| hydrogen ion transmembrane transport | 0.038052448 | GO:1902600 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000053 | - | - |
| CRO_T001800 | - | - |
| CRO_T002531 | - | - |
| CRO_T003375 | AT2G40780 (4.00E-36) | Nucleic acid-binding, OB-fold-like protein |
| CRO_T012230 | ATMG01360 (2.00E-17) | COX1|cytochrome oxidase |
| CRO_T018118 | - | - |
| CRO_T022516 | - | - |
| CRO_T028890 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000017 | Oxidative phosphorylation mitochondrion NADH dehydrogenase (ubiquinone) activity mitochondrial inner membrane heme transporter activity heme transport cytochrome-c oxidase activity respiratory chain cytochrome complex assembly hydrogen ion transmembrane transport ATP synthesis coupled electron transport heme binding aerobic respiration hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances aerobic electron transport chain electron transport chain generation of precursor metabolites and energy ATP synthesis coupled proton transport mitochondrial electron transport, NADH to ubiquinone hydrogen ion transmembrane transporter activity quinone binding photosynthetic electron transport in photosystem II succinate dehydrogenase activity electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity succinate dehydrogenase complex | details |
| TreatCFM000032 | details | |
| TreatCFM000044 | details | |
| TreatCFM000178 | cell tip growth mitotic spindle assembly checkpoint | details |
| TreatCFM000247 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K xyloglucan biosynthetic process endomembrane system organization fucose biosynthetic process activation of MAPK activity defense response, incompatible interaction MAP kinase kinase activity formation of glycosidic bonds, GlycosylTransferases: GTnc MAP kinase activity salicylic acid mediated signaling pathway unidimensional cell growth aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis MAPK cascade MAPK signaling pathway - plant | details |
| TreatCFM000385 | xyloglucan biosynthetic process endomembrane system organization fucose biosynthetic process | details |
| TreatCFM000392 | translational initiation translation initiation factor activity viral replication complex formation and maintenance xyloglucan biosynthesis Transcription_related, Transcription regulator: SWI/SNF-BAF60b formation of glycosidic bonds, GlycosylTransferases: GTnc Ribosome biogenesis in eukaryotes ribosome biogenesis plant-type vacuole membrane GTPase activity | details |
| TreatCFM000427 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K activation of MAPK activity defense response, incompatible interaction MAP kinase kinase activity Cyanoamino acid metabolism nitrate transport response to nitrate electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity MAP kinase activity photosynthetic electron transport in photosystem II | details |
| TreatCFM000624 | xyloglucan biosynthetic process endomembrane system organization fucose biosynthetic process production of siRNA involved in RNA interference RNA phosphodiester bond hydrolysis formation of glycosidic bonds, GlycosylTransferases: GTnc RISC complex integral component of Golgi membrane salicylic acid mediated signaling pathway unidimensional cell growth aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis ribonuclease III activity translational initiation translation initiation factor activity transferase activity, transferring glycosyl groups | details |
| TreatCFM000702 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K fucose biosynthetic process defense response, incompatible interaction endomembrane system organization xyloglucan biosynthetic process activation of MAPK activity formation of glycosidic bonds, GlycosylTransferases: GTnc MAP kinase kinase activity aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis integral component of Golgi membrane salicylic acid mediated signaling pathway MAP kinase activity unidimensional cell growth MAPK cascade | details |
| TreatCFM000753 | details | |
| TreatCFM000833 | Protein_kinases_phosphatases, PPC:1.6.2: Plant External Response Like Kinase RNA lariat debranching enzyme activity NF-kappa B signaling pathway | details |
| TreatCFM000906 | Transcription_related, Transcription factor: TCP electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity photosynthetic electron transport in photosystem II translational initiation translation initiation factor activity | details |
| TreatCFM001108 | translation initiation factor activity xyloglucan biosynthesis osmosensor activity histidine phosphotransfer kinase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: Orphans stomatal complex patterning DNA-dependent ATPase activity phosphorelay sensor kinase activity damaged DNA binding eukaryotic 48S preinitiation complex eukaryotic translation initiation factor 3 complex eukaryotic 43S preinitiation complex seed maturation response to osmotic stress regulation of translational initiation response to water deprivation phosphorelay signal transduction system signal transduction by protein phosphorylation formation of translation preinitiation complex translational initiation DNA repair helicase activity | details |
| TreatCFM001233 | translational initiation translation initiation factor activity | details |
| TreatCFM001255 | translational initiation translation initiation factor activity | details |
| TreatCFM001261 | translational initiation Transcription_related, Transcription factor: TCP Ubiquitin mediated proteolysis translation initiation factor activity | details |
| TreatCFM001573 | phosphate-containing compound metabolic process cellular protein modification process translational initiation | details |
| TreatCFM001640 | trans-Golgi network outer membrane-bounded periplasmic space Calcium signaling pathway MAPK signaling pathway early endosome manganese ion homeostasis manganese-transporting ATPase activity manganese ion transmembrane transport cell plate assembly cytochrome complex assembly calcium ion transmembrane transport ATP binding calcium-transporting ATPase activity RNA secondary structure unwinding root development translational initiation | details |
| TreatCFM001694 | Protein_kinases_phosphatases, PPC:1.2.1: Receptor Like Cytoplasmic Kinase VIII outer membrane-bounded periplasmic space clathrin adaptor complex Fanconi anemia pathway Lysosome cellular response to DNA damage stimulus cytochrome complex assembly DNA metabolic process | details |
| TreatCFM001827 | Fanconi anemia pathway RNA lariat debranching enzyme activity Endocytosis DNA metabolic process RNA phosphodiester bond hydrolysis, endonucleolytic mRNA splicing, via spliceosome DNA biosynthetic process translational initiation cellular response to DNA damage stimulus positive regulation of GTPase activity DNA repair embryo development ending in seed dormancy nucleotidyltransferase activity GTPase activator activity | details |
Expression profiles
 Show details about module gene expression profiling |