TreatCFM001640's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| trans-Golgi network | 0.001714303 | GO:0005802 |
| outer membrane-bounded periplasmic space | 0.003036347 | GO:0030288 |
| Calcium signaling pathway | 0.005312472 | KEGG pathway |
| MAPK signaling pathway | 0.005312472 | KEGG pathway |
| early endosome | 0.005395957 | GO:0005769 |
| manganese ion homeostasis | 0.009029289 | GO:0055071 |
| manganese-transporting ATPase activity | 0.01038718 | GO:0015410 |
| manganese ion transmembrane transport | 0.012033716 | GO:0071421 |
| cell plate assembly | 0.012033716 | GO:0000919 |
| cytochrome complex assembly | 0.017134113 | GO:0017004 |
| calcium ion transmembrane transport | 0.017134113 | GO:0070588 |
| ATP binding | 0.020867758 | GO:0005524 |
| calcium-transporting ATPase activity | 0.024215271 | GO:0005388 |
| RNA secondary structure unwinding | 0.026366831 | GO:0010501 |
| root development | 0.026366831 | GO:0048364 |
| translational initiation | 0.028676852 | GO:0006413 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003087 | AT1G10130 (0) | ATECA3|ER-TYPE CA2+-ATPASE 3; ECA3|endoplasmic reticulum-type calcium-transporting ATPase 3 |
| CRO_T003324 | AT1G12770 (1.00E-37) | EMB1586|embryo defective 1586; ISE1|INCREASED SIZE EXCLUSION LIMIT 1 |
| CRO_T003375 | AT2G40780 (4.00E-36) | Nucleic acid-binding, OB-fold-like protein |
| CRO_T005664 | - | - |
| CRO_T017850 | AT5G55990 (4.00E-113) | CBL2|calcineurin B-like protein 2 |
| CRO_T019925 | AT5G11040 (0) | VAN4|VASCULAR NETWORK DEFECTIVE 4 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000017 | Oxidative phosphorylation mitochondrion NADH dehydrogenase (ubiquinone) activity mitochondrial inner membrane heme transporter activity heme transport cytochrome-c oxidase activity respiratory chain cytochrome complex assembly hydrogen ion transmembrane transport ATP synthesis coupled electron transport heme binding aerobic respiration hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances aerobic electron transport chain electron transport chain generation of precursor metabolites and energy ATP synthesis coupled proton transport mitochondrial electron transport, NADH to ubiquinone hydrogen ion transmembrane transporter activity quinone binding photosynthetic electron transport in photosystem II succinate dehydrogenase activity electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity succinate dehydrogenase complex | details |
| TreatCFM000032 | details | |
| TreatCFM000044 | details | |
| TreatCFM000178 | cell tip growth mitotic spindle assembly checkpoint | details |
| TreatCFM000385 | xyloglucan biosynthetic process endomembrane system organization fucose biosynthetic process | details |
| TreatCFM000392 | translational initiation translation initiation factor activity viral replication complex formation and maintenance xyloglucan biosynthesis Transcription_related, Transcription regulator: SWI/SNF-BAF60b formation of glycosidic bonds, GlycosylTransferases: GTnc Ribosome biogenesis in eukaryotes ribosome biogenesis plant-type vacuole membrane GTPase activity | details |
| TreatCFM000427 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K activation of MAPK activity defense response, incompatible interaction MAP kinase kinase activity Cyanoamino acid metabolism nitrate transport response to nitrate electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity MAP kinase activity photosynthetic electron transport in photosystem II | details |
| TreatCFM000476 | aerobic respiration electron transport chain Oxidative phosphorylation translational initiation hydrogen ion transmembrane transport | details |
| TreatCFM000624 | xyloglucan biosynthetic process endomembrane system organization fucose biosynthetic process production of siRNA involved in RNA interference RNA phosphodiester bond hydrolysis formation of glycosidic bonds, GlycosylTransferases: GTnc RISC complex integral component of Golgi membrane salicylic acid mediated signaling pathway unidimensional cell growth aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis ribonuclease III activity translational initiation translation initiation factor activity transferase activity, transferring glycosyl groups | details |
| TreatCFM000702 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K fucose biosynthetic process defense response, incompatible interaction endomembrane system organization xyloglucan biosynthetic process activation of MAPK activity formation of glycosidic bonds, GlycosylTransferases: GTnc MAP kinase kinase activity aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis integral component of Golgi membrane salicylic acid mediated signaling pathway MAP kinase activity unidimensional cell growth MAPK cascade | details |
| TreatCFM000753 | details | |
| TreatCFM000833 | Protein_kinases_phosphatases, PPC:1.6.2: Plant External Response Like Kinase RNA lariat debranching enzyme activity NF-kappa B signaling pathway | details |
| TreatCFM000906 | Transcription_related, Transcription factor: TCP electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity photosynthetic electron transport in photosystem II translational initiation translation initiation factor activity | details |
| TreatCFM001108 | translation initiation factor activity xyloglucan biosynthesis osmosensor activity histidine phosphotransfer kinase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: Orphans stomatal complex patterning DNA-dependent ATPase activity phosphorelay sensor kinase activity damaged DNA binding eukaryotic 48S preinitiation complex eukaryotic translation initiation factor 3 complex eukaryotic 43S preinitiation complex seed maturation response to osmotic stress regulation of translational initiation response to water deprivation phosphorelay signal transduction system signal transduction by protein phosphorylation formation of translation preinitiation complex translational initiation DNA repair helicase activity | details |
| TreatCFM001233 | translational initiation translation initiation factor activity | details |
| TreatCFM001244 | organic cyclic compound metabolic process long-chain fatty acid biosynthetic process small molecule metabolic process response to molecule of fungal origin phosphatidylserine biosynthetic process phosphatidylethanolamine biosynthesis I superpathway of phospholipid biosynthesis II (plants) heterocycle metabolic process sphingosine N-acyltransferase activity tocopherol cyclase activity vitamin E biosynthesis (tocopherols) cellular lipid metabolic process Ubiquitin_Proteasome_system, E3: U-box MAPK signaling pathway Ubiquinone and other terpenoid-quinone biosynthesis Glycerophospholipid metabolism chloroplast part | details |
| TreatCFM001255 | translational initiation translation initiation factor activity | details |
| TreatCFM001261 | translational initiation Transcription_related, Transcription factor: TCP Ubiquitin mediated proteolysis translation initiation factor activity | details |
| TreatCFM001573 | phosphate-containing compound metabolic process cellular protein modification process translational initiation | details |
| TreatCFM001694 | Protein_kinases_phosphatases, PPC:1.2.1: Receptor Like Cytoplasmic Kinase VIII outer membrane-bounded periplasmic space clathrin adaptor complex Fanconi anemia pathway Lysosome cellular response to DNA damage stimulus cytochrome complex assembly DNA metabolic process | details |
| TreatCFM001733 | CTP:2-trans,-6-trans-farnesol kinase activity geranylgeraniol kinase activity geraniol kinase activity tocopherol cyclase activity farnesylcysteine salvage pathway vitamin E biosynthesis (tocopherols) small molecule metabolic process organic cyclic compound metabolic process farnesol metabolic process heterocycle metabolic process carpel development cellular lipid metabolic process magnesium ion transmembrane transport magnesium ion transport magnesium ion transmembrane transporter activity iron-sulfur cluster assembly MAPK signaling pathway Terpenoid backbone biosynthesis Ubiquinone and other terpenoid-quinone biosynthesis nucleotidyltransferase activity response to abscisic acid chloroplast part | details |
| TreatCFM001827 | Fanconi anemia pathway RNA lariat debranching enzyme activity Endocytosis DNA metabolic process RNA phosphodiester bond hydrolysis, endonucleolytic mRNA splicing, via spliceosome DNA biosynthetic process translational initiation cellular response to DNA damage stimulus positive regulation of GTPase activity DNA repair embryo development ending in seed dormancy nucleotidyltransferase activity GTPase activator activity | details |
| TreatCFM001895 | vitamin E biosynthesis (tocopherols) tocopherol cyclase activity small molecule metabolic process organic cyclic compound metabolic process heterocycle metabolic process resolution of recombination intermediates Smc5-Smc6 complex vacuolar proton-transporting V-type ATPase, V1 domain plant-type vacuole cellular lipid metabolic process chromosome organization double-strand break repair via homologous recombination MAPK signaling pathway Ubiquinone and other terpenoid-quinone biosynthesis chloroplast part iron-sulfur cluster assembly unidimensional cell growth response to heat ATP hydrolysis coupled proton transport hydrogen ion transmembrane transporter activity heat shock protein binding mitochondrial matrix | details |
| TreatCFM001936 | geranylgeraniol kinase activity CTP:2-trans,-6-trans-farnesol kinase activity geraniol kinase activity postreplication repair carpel development protein K63-linked ubiquitination farnesol metabolic process tRNA pseudouridine synthesis farnesylcysteine salvage pathway Ubiquitin_Proteasome_system, E2: UBC Nucleotide excision repair Toll and Imd signaling pathway adenosine ribonucleotides de novo biosynthesis MAPK signaling pathway deaminase activity ABC transporters Terpenoid backbone biosynthesis pseudouridine synthase activity | details |
| TreatCFM002138 | glutaminyl-tRNAgln biosynthesis via transamidation lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3) queuine tRNA-ribosyltransferase activity inositol-1,3,4-trisphosphate 6-kinase activity glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity inositol tetrakisphosphate 1-kinase activity inositol-1,3,4-trisphosphate 5-kinase activity inositol trisphosphate metabolic process glutaminyl-tRNAGln biosynthesis via transamidation queuosine biosynthetic process glutamyl-tRNA(Gln) amidotransferase complex mitochondrial translation 1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza) glucan endo-1,3-beta-D-glucosidase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Aminoacyl-tRNA biosynthesis Inositol phosphate metabolism RNA secondary structure unwinding Starch and sucrose metabolism cell redox homeostasis | details |
Expression profiles
 Show details about module gene expression profiling |