TreatCFM000178's detailed annotation

Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
cell tip growth0.04893411GO:0009932
mitotic spindle assembly checkpoint0.04893411GO:0007094

Module member annotation

Gene IDOrtholog in Arabidopsis (Blast E-value)Annotation in Arabidopsis
CRO_T000719--
CRO_T001763--
CRO_T002396--
CRO_T002767--
CRO_T003212--
CRO_T003245AT1G33710 (1.00E-06)RNA-directed DNA polymerase (reverse transcriptase)-related family protein
CRO_T003375AT2G40780 (4.00E-36)Nucleic acid-binding, OB-fold-like protein
CRO_T003575--
CRO_T003795--
CRO_T004038--
CRO_T004842AT3G43190 (9.00E-24)ATSUS4|SUCROSE SYNTHASE 4
CRO_T005046--
CRO_T005492--
CRO_T006239--
CRO_T006340--
CRO_T006538--
CRO_T006711--
CRO_T007092--
CRO_T007100AT4G07350 (5.00E-04)unknown protein
CRO_T008212--
CRO_T008866--
CRO_T009195--
CRO_T009681--
CRO_T009876AT4G00100 (2.00E-26)ATRPS13A|ribosomal protein S13A; PFL2|POINTED FIRST LEAF 2
CRO_T010383--
CRO_T010700--
CRO_T010757--
CRO_T013079--
CRO_T013176--
CRO_T013179--
CRO_T013682--
CRO_T014232--
CRO_T014541--
CRO_T014779AT1G20500 (2.00E-49)AMP-dependent synthetase and ligase family protein
CRO_T015504--
CRO_T015841--
CRO_T016023--
CRO_T018673--
CRO_T019136--
CRO_T019287--
CRO_T019599--
CRO_T020382--
CRO_T020669--
CRO_T020805--
CRO_T020964AT2G44420 (1.00E-88)protein N-terminal asparagine amidohydrolase family protein
CRO_T022016--
CRO_T022444--
CRO_T022494--
CRO_T022668--
CRO_T023332--
CRO_T023350AT3G03450 (3.00E-30)RGL2|RGA-like 2
CRO_T023857AT4G04890 (9.00E-26)PDF2|protodermal factor 2
CRO_T024788--
CRO_T024898AT2G16390 (2.00E-22)DMS1|DEFECTIVE IN MERISTEM SILENCING 1; DRD1|DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1
CRO_T025307--
CRO_T025311--
CRO_T025574--
CRO_T025943--
CRO_T026295--
CRO_T026484AT1G72970 (4.00E-15)EDA17|embryo sac development arrest 17; HTH|HOTHEAD
CRO_T026761AT5G05510 (2.00E-16)Mad3/BUB1 homology region 1
CRO_T026974AT3G04710 (1.00E-15)TPR10|tetratricopeptide repeat 10
CRO_T027325--
CRO_T027549--
CRO_T028223--
CRO_T028437--
CRO_T028686--
CRO_T028850--
CRO_T028885--
CRO_T029276--
CRO_T029763--
CRO_T029845--
CRO_T029944--
CRO_T030229--
CRO_T030316--
CRO_T032686--

Direct connection functional modules

Module IDFunction AnnotationOverlap condition
TreatCFM000017Oxidative phosphorylation
mitochondrion
NADH dehydrogenase (ubiquinone) activity
mitochondrial inner membrane
heme transporter activity
heme transport
cytochrome-c oxidase activity
respiratory chain
cytochrome complex assembly
hydrogen ion transmembrane transport
ATP synthesis coupled electron transport
heme binding
aerobic respiration
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
aerobic electron transport chain
electron transport chain
generation of precursor metabolites and energy
ATP synthesis coupled proton transport
mitochondrial electron transport, NADH to ubiquinone
hydrogen ion transmembrane transporter activity
quinone binding
photosynthetic electron transport in photosystem II
succinate dehydrogenase activity
electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
succinate dehydrogenase complex
details
TreatCFM000032details
TreatCFM000033mitotic spindle assembly checkpoint
Cell cycle
Transcription_related, Transcription factor: bZIP
details
TreatCFM000044details
TreatCFM000054low-affinity nitrate transport
low-affinity nitrate transmembrane transporter activity
mitotic spindle assembly checkpoint
Transcription_related, Transcription factor: bZIP
oligopeptide transport
Cell cycle
Amino sugar and nucleotide sugar metabolism
details
TreatCFM000065Cytochrome_P450, Cytochrome P450: CYP724A
details
TreatCFM000076Protein_kinases_phosphatases, PPC:4.1.4: MAP2K
Ubiquitin_Proteasome_system, DUB: JAMM
defense response, incompatible interaction
histone modification
activation of MAPK activity
transcription elongation from RNA polymerase II promoter
cullin deneddylation
COP9 signalosome
Cdc73/Paf1 complex
MAP kinase kinase activity
MAP kinase activity
transcription coactivator activity
transcription from RNA polymerase II promoter
MAPK cascade
MAPK signaling pathway - plant
details
TreatCFM000098Cytochrome_P450, Cytochrome P450: CYP78A
Protein_kinases_phosphatases, PPC:4.5.1.1: Male grem cell-associated kinase (mak)
details
TreatCFM0001223-hydroxyisobutyryl-CoA hydrolase activity
L-valine degradation I
histone acetyltransferase activity
heterotrimeric G-protein complex
Cul4-RING E3 ubiquitin ligase complex
organ morphogenesis
regulation of root development
lateral root development
fruit development
defense response to fungus, incompatible interaction
response to extracellular stimulus
endoplasmic reticulum unfolded protein response
reactive oxygen species metabolic process
negative regulation of abscisic acid-activated signaling pathway
Ras signaling pathway
histone acetylation
jasmonic acid mediated signaling pathway
Transcription_related, Transcription regulator: mTERF
response to ethylene
details
TreatCFM000130mitotic spindle assembly checkpoint
Cell cycle
Transcription_related, Transcription factor: bZIP
details
TreatCFM000209intracellular
Ubiquitin_Proteasome_system, DUB: OTU
details
TreatCFM000211mitotic spindle assembly checkpoint
Cell cycle
Transcription_related, Transcription factor: bZIP
NADH dehydrogenase (ubiquinone) activity
details
TreatCFM000220mitotic spindle assembly checkpoint
Cell cycle
Transcription_related, Transcription factor: bZIP
details
TreatCFM000221mitotic spindle assembly checkpoint
Cell cycle
Transcription_related, Transcription factor: bZIP
details
TreatCFM000229mitotic spindle assembly checkpoint
Protein_kinases_phosphatases, PPC:1.4.1: Crinkly 4 Like Kinase
Transcription_related, Transcription factor: bZIP
Cell cycle
NF-kappa B signaling pathway
details
TreatCFM000242protein methylation
mitochondrial small ribosomal subunit
protein methyltransferase activity
details
TreatCFM000245details
TreatCFM000264Protein_kinases_phosphatases, PPC:4.1.4: MAP2K
defense response, incompatible interaction
activation of MAPK activity
MAP kinase kinase activity
MAP kinase activity
MAPK cascade
MAPK signaling pathway - plant
details
TreatCFM000280defense response, incompatible interaction
activation of MAPK activity
lipid transporter activity
MAP kinase kinase activity
MAP kinase activity
Protein_kinases_phosphatases, PPC:4.1.4: MAP2K
lipid transport
MAPK cascade
Lysosome
adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57
Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII
MAPK signaling pathway - plant
details
TreatCFM000307details
TreatCFM000317cytoplasmic, membrane-bounded vesicle
details
TreatCFM000331Protein_kinases_phosphatases, PPC:4.1.4: MAP2K
defense response, incompatible interaction
activation of MAPK activity
MAP kinase kinase activity
MAP kinase activity
MAPK cascade
MAPK signaling pathway - plant
details
TreatCFM000332hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
nitrogen compound metabolic process
transferase activity, transferring acyl groups
plastid
details
TreatCFM000351lipid transporter activity
lipid transport
Lysosome
details
TreatCFM000357tRNA dihydrouridine synthesis
mitotic spindle assembly checkpoint
tRNA dihydrouridine synthase activity
Cell cycle
details
TreatCFM000369mitotic spindle assembly checkpoint
Cell cycle
Transcription_related, Transcription factor: bZIP
carbohydrate binding
details
TreatCFM000385xyloglucan biosynthetic process
endomembrane system organization
fucose biosynthetic process
details
TreatCFM000392translational initiation
translation initiation factor activity
viral replication complex formation and maintenance
xyloglucan biosynthesis
Transcription_related, Transcription regulator: SWI/SNF-BAF60b
formation of glycosidic bonds, GlycosylTransferases: GTnc
Ribosome biogenesis in eukaryotes
ribosome biogenesis
plant-type vacuole membrane
GTPase activity
details
TreatCFM000427Protein_kinases_phosphatases, PPC:4.1.4: MAP2K
activation of MAPK activity
defense response, incompatible interaction
MAP kinase kinase activity
Cyanoamino acid metabolism
nitrate transport
response to nitrate
electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
MAP kinase activity
photosynthetic electron transport in photosystem II
details
TreatCFM000434ADP dimethylallyltransferase activity
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
ATP dimethylallyltransferase activity
details
TreatCFM000437histone methyltransferase activity (H3-K27 specific)
DNA mediated transformation
histone H3-K27 methylation
regulation of DNA replication
mitotic spindle assembly checkpoint
Cell cycle
Transcription_related, Transcription factor: bZIP
Transcription_related, Transcription regulator: SET
pollen development
details
TreatCFM000460details
TreatCFM000476aerobic respiration
electron transport chain
Oxidative phosphorylation
translational initiation
hydrogen ion transmembrane transport
details
TreatCFM000502histone methyltransferase activity (H3-K27 specific)
regulation of DNA replication
mitotic spindle assembly checkpoint
DNA mediated transformation
histone H3-K27 methylation
Cell cycle
Transcription_related, Transcription factor: bZIP
Transcription_related, Transcription regulator: SET
pollen development
details
TreatCFM000518alkaloid biosynthetic process
nitrogen compound metabolic process
ajmaline and sarpagine biosynthesis
vomilenine glucosyltransferase activity
strictosidine beta-glucosidase activity
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
raucaffricine beta-glucosidase activity
phospholipid binding
details
TreatCFM000613Ubiquitin_Proteasome_system, DUB: JAMM
proteasome complex
precatalytic spliceosome
COP9 signalosome
cullin deneddylation
proteasome-mediated ubiquitin-dependent protein catabolic process
response to salt stress
Proteasome
details
TreatCFM000619hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
nitrogen compound metabolic process
transferase activity, transferring acyl groups
plastid
details
TreatCFM000624xyloglucan biosynthetic process
endomembrane system organization
fucose biosynthetic process
production of siRNA involved in RNA interference
RNA phosphodiester bond hydrolysis
formation of glycosidic bonds, GlycosylTransferases: GTnc
RISC complex
integral component of Golgi membrane
salicylic acid mediated signaling pathway
unidimensional cell growth
aerobic respiration I (cytochrome c)
aerobic respiration III (alternative oxidase pathway)
NAD/NADH phosphorylation and dephosphorylation
xyloglucan biosynthesis
ribonuclease III activity
translational initiation
translation initiation factor activity
transferase activity, transferring glycosyl groups
details
TreatCFM000636mitotic spindle assembly checkpoint
Cell cycle
Transcription_related, Transcription factor: bZIP
details
TreatCFM000642mitotic spindle assembly checkpoint
Cell cycle
Transcription_related, Transcription factor: bZIP
details
TreatCFM000645carbohydrate binding
details
TreatCFM000675adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57
hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc
Protein_kinases_phosphatases, PPC:4.1.4: MAP2K
endomembrane system organization
fucose biosynthetic process
xyloglucan biosynthetic process
defense response, incompatible interaction
activation of MAPK activity
MAP kinase kinase activity
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
cell wall macromolecule catabolic process
details
TreatCFM000702Protein_kinases_phosphatases, PPC:4.1.4: MAP2K
fucose biosynthetic process
defense response, incompatible interaction
endomembrane system organization
xyloglucan biosynthetic process
activation of MAPK activity
formation of glycosidic bonds, GlycosylTransferases: GTnc
MAP kinase kinase activity
aerobic respiration I (cytochrome c)
aerobic respiration III (alternative oxidase pathway)
NAD/NADH phosphorylation and dephosphorylation
xyloglucan biosynthesis
integral component of Golgi membrane
salicylic acid mediated signaling pathway
MAP kinase activity
unidimensional cell growth
MAPK cascade
details
TreatCFM000725Protein_kinases_phosphatases, PPC:4.1.4: MAP2K
defense response, incompatible interaction
activation of MAPK activity
MAP kinase kinase activity
MAP kinase activity
MAPK cascade
MAPK signaling pathway - plant
details
TreatCFM000750Protein_kinases_phosphatases, PPC:4.1.4: MAP2K
activation of MAPK activity
defense response, incompatible interaction
MAP kinase kinase activity
MAP kinase activity
MAPK cascade
MAPK signaling pathway - plant
details
TreatCFM000753details
TreatCFM000764Protein_kinases_phosphatases, PPC:4.1.4: MAP2K
activation of MAPK activity
defense response, incompatible interaction
MAP kinase kinase activity
details
TreatCFM000765cytoplasmic, membrane-bounded vesicle
details
TreatCFM000774COP9 signalosome
cullin deneddylation
Ubiquitin_Proteasome_system, DUB: JAMM
details
TreatCFM000782small GTPase mediated signal transduction
GTP binding
intracellular
details
TreatCFM000785mitotic spindle assembly checkpoint
Oxidative phosphorylation
details
TreatCFM000786details
TreatCFM000794Protein_kinases_phosphatases, PPC:4.1.4: MAP2K
defense response, incompatible interaction
activation of MAPK activity
MAP kinase kinase activity
MAP kinase activity
MAPK cascade
MAPK signaling pathway - plant
details
TreatCFM000829Ubiquitin_Proteasome_system, DUB: JAMM
cullin deneddylation
COP9 signalosome
carbohydrate transport
details
TreatCFM000833Protein_kinases_phosphatases, PPC:1.6.2: Plant External Response Like Kinase
RNA lariat debranching enzyme activity
NF-kappa B signaling pathway
details
TreatCFM000835details
TreatCFM000862mitotic spindle assembly checkpoint
Transcription_related, Transcription factor: bZIP
Apelin signaling pathway
Cell cycle
details
TreatCFM000872mitotic spindle assembly checkpoint
Transcription_related, Transcription factor: bZIP
Apelin signaling pathway
Cell cycle
details
TreatCFM000906Transcription_related, Transcription factor: TCP
electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
photosynthetic electron transport in photosystem II
translational initiation
translation initiation factor activity
details
TreatCFM000961mitotic spindle assembly checkpoint
Cell cycle
Transcription_related, Transcription factor: bZIP
Ubiquitin_Proteasome_system, DUB: USP
details
TreatCFM000969cytoplasmic, membrane-bounded vesicle
details
TreatCFM000971mitotic spindle assembly checkpoint
Protein_kinases_phosphatases, PPC:1.4.1: Crinkly 4 Like Kinase
Transcription_related, Transcription factor: bZIP
Cell cycle
NF-kappa B signaling pathway
details
TreatCFM000994mitotic spindle assembly checkpoint
Cell cycle
Transcription_related, Transcription factor: bZIP
details
TreatCFM001014hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
nitrogen compound metabolic process
transferase activity, transferring acyl groups
plastid
details
TreatCFM001037vacuole
details
TreatCFM001075mitotic spindle assembly checkpoint
Cell cycle
Transcription_related, Transcription factor: bZIP
details
TreatCFM001076mitotic spindle assembly checkpoint
ATP synthesis coupled electron transport
Transcription_related, Transcription factor: bZIP
NADH dehydrogenase (ubiquinone) activity
mitochondrion
details
TreatCFM001108translation initiation factor activity
xyloglucan biosynthesis
osmosensor activity
histidine phosphotransfer kinase activity
formation of glycosidic bonds, GlycosylTransferases: GTnc
Transcription_related, Transcription factor: Orphans
stomatal complex patterning
DNA-dependent ATPase activity
phosphorelay sensor kinase activity
damaged DNA binding
eukaryotic 48S preinitiation complex
eukaryotic translation initiation factor 3 complex
eukaryotic 43S preinitiation complex
seed maturation
response to osmotic stress
regulation of translational initiation
response to water deprivation
phosphorelay signal transduction system
signal transduction by protein phosphorylation
formation of translation preinitiation complex
translational initiation
DNA repair
helicase activity
details
TreatCFM001175mitotic spindle assembly checkpoint
Cell cycle
Transcription_related, Transcription factor: bZIP
details
TreatCFM001222intracellular protein transport
details
TreatCFM001233translational initiation
translation initiation factor activity
details
TreatCFM001234hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
nitrogen compound metabolic process
transferase activity, transferring acyl groups
plastid
details
TreatCFM001255translational initiation
translation initiation factor activity
details
TreatCFM001261translational initiation
Transcription_related, Transcription factor: TCP
Ubiquitin mediated proteolysis
translation initiation factor activity
details
TreatCFM001265details
TreatCFM001327cell tip growth
amylopectin biosynthetic process
starch biosynthesis
acyl binding
alpha-1,4-glucan synthase activity
starch synthase activity
starch biosynthetic process
glycogen (starch) synthase activity
formation of glycosidic bonds, GlycosylTransferases: GTnc
protein-cysteine S-palmitoyltransferase activity
ATP-dependent helicase activity
AMPK signaling pathway
Fanconi anemia pathway
Ubiquitin_Proteasome_system, E2: UBC
details
TreatCFM001410polyamine transmembrane transport
mitotic spindle assembly checkpoint
Transcription_related, Transcription factor: bZIP
cellular metabolic process
amino acid transmembrane transport
L-amino acid transmembrane transporter activity
polyamine transmembrane transporter activity
Cell cycle
details
TreatCFM001569mitotic spindle assembly checkpoint
Cell cycle
Transcription_related, Transcription factor: bZIP
intracellular membrane-bounded organelle
details
TreatCFM001573phosphate-containing compound metabolic process
cellular protein modification process
translational initiation
details
TreatCFM001637Ubiquitin_Proteasome_system, DUB: JAMM
rosmarinic acid biosynthesis I
rosmarinic acid biosynthesis II
4-hydroxybenzoate biosynthesis I (eukaryotes)
rRNA primary transcript binding
oligosaccharyltransferase complex
COP9 signalosome
maturation of LSU-rRNA
maturation of 5.8S rRNA
protein N-linked glycosylation
cullin deneddylation
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
ribosomal large subunit assembly
NAD binding
preribosome, large subunit precursor
N-Glycan biosynthesis
embryo development ending in seed dormancy
details
TreatCFM001640trans-Golgi network
outer membrane-bounded periplasmic space
Calcium signaling pathway
MAPK signaling pathway
early endosome
manganese ion homeostasis
manganese-transporting ATPase activity
manganese ion transmembrane transport
cell plate assembly
cytochrome complex assembly
calcium ion transmembrane transport
ATP binding
calcium-transporting ATPase activity
RNA secondary structure unwinding
root development
translational initiation
details
TreatCFM001694Protein_kinases_phosphatases, PPC:1.2.1: Receptor Like Cytoplasmic Kinase VIII
outer membrane-bounded periplasmic space
clathrin adaptor complex
Fanconi anemia pathway
Lysosome
cellular response to DNA damage stimulus
cytochrome complex assembly
DNA metabolic process
details
TreatCFM001827Fanconi anemia pathway
RNA lariat debranching enzyme activity
Endocytosis
DNA metabolic process
RNA phosphodiester bond hydrolysis, endonucleolytic
mRNA splicing, via spliceosome
DNA biosynthetic process
translational initiation
cellular response to DNA damage stimulus
positive regulation of GTPase activity
DNA repair
embryo development ending in seed dormancy
nucleotidyltransferase activity
GTPase activator activity
details

Expression profiles


Show details about module gene expression profiling
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