TreatCFM000178's detailed annotation
Module annotation (GSEA enrichment result)
Function Annotation | FDR | Gene Ontolog |
---|---|---|
cell tip growth | 0.04893411 | GO:0009932 |
mitotic spindle assembly checkpoint | 0.04893411 | GO:0007094 |
Module member annotation
Direct connection functional modules
Module ID | Function Annotation | Overlap condition |
---|---|---|
TreatCFM000017 | Oxidative phosphorylation mitochondrion NADH dehydrogenase (ubiquinone) activity mitochondrial inner membrane heme transporter activity heme transport cytochrome-c oxidase activity respiratory chain cytochrome complex assembly hydrogen ion transmembrane transport ATP synthesis coupled electron transport heme binding aerobic respiration hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances aerobic electron transport chain electron transport chain generation of precursor metabolites and energy ATP synthesis coupled proton transport mitochondrial electron transport, NADH to ubiquinone hydrogen ion transmembrane transporter activity quinone binding photosynthetic electron transport in photosystem II succinate dehydrogenase activity electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity succinate dehydrogenase complex | details |
TreatCFM000032 | details | |
TreatCFM000033 | mitotic spindle assembly checkpoint Cell cycle Transcription_related, Transcription factor: bZIP | details |
TreatCFM000044 | details | |
TreatCFM000054 | low-affinity nitrate transport low-affinity nitrate transmembrane transporter activity mitotic spindle assembly checkpoint Transcription_related, Transcription factor: bZIP oligopeptide transport Cell cycle Amino sugar and nucleotide sugar metabolism | details |
TreatCFM000065 | Cytochrome_P450, Cytochrome P450: CYP724A | details |
TreatCFM000076 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K Ubiquitin_Proteasome_system, DUB: JAMM defense response, incompatible interaction histone modification activation of MAPK activity transcription elongation from RNA polymerase II promoter cullin deneddylation COP9 signalosome Cdc73/Paf1 complex MAP kinase kinase activity MAP kinase activity transcription coactivator activity transcription from RNA polymerase II promoter MAPK cascade MAPK signaling pathway - plant | details |
TreatCFM000098 | Cytochrome_P450, Cytochrome P450: CYP78A Protein_kinases_phosphatases, PPC:4.5.1.1: Male grem cell-associated kinase (mak) | details |
TreatCFM000122 | 3-hydroxyisobutyryl-CoA hydrolase activity L-valine degradation I histone acetyltransferase activity heterotrimeric G-protein complex Cul4-RING E3 ubiquitin ligase complex organ morphogenesis regulation of root development lateral root development fruit development defense response to fungus, incompatible interaction response to extracellular stimulus endoplasmic reticulum unfolded protein response reactive oxygen species metabolic process negative regulation of abscisic acid-activated signaling pathway Ras signaling pathway histone acetylation jasmonic acid mediated signaling pathway Transcription_related, Transcription regulator: mTERF response to ethylene | details |
TreatCFM000130 | mitotic spindle assembly checkpoint Cell cycle Transcription_related, Transcription factor: bZIP | details |
TreatCFM000209 | intracellular Ubiquitin_Proteasome_system, DUB: OTU | details |
TreatCFM000211 | mitotic spindle assembly checkpoint Cell cycle Transcription_related, Transcription factor: bZIP NADH dehydrogenase (ubiquinone) activity | details |
TreatCFM000220 | mitotic spindle assembly checkpoint Cell cycle Transcription_related, Transcription factor: bZIP | details |
TreatCFM000221 | mitotic spindle assembly checkpoint Cell cycle Transcription_related, Transcription factor: bZIP | details |
TreatCFM000229 | mitotic spindle assembly checkpoint Protein_kinases_phosphatases, PPC:1.4.1: Crinkly 4 Like Kinase Transcription_related, Transcription factor: bZIP Cell cycle NF-kappa B signaling pathway | details |
TreatCFM000242 | protein methylation mitochondrial small ribosomal subunit protein methyltransferase activity | details |
TreatCFM000245 | details | |
TreatCFM000264 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K defense response, incompatible interaction activation of MAPK activity MAP kinase kinase activity MAP kinase activity MAPK cascade MAPK signaling pathway - plant | details |
TreatCFM000280 | defense response, incompatible interaction activation of MAPK activity lipid transporter activity MAP kinase kinase activity MAP kinase activity Protein_kinases_phosphatases, PPC:4.1.4: MAP2K lipid transport MAPK cascade Lysosome adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII MAPK signaling pathway - plant | details |
TreatCFM000307 | details | |
TreatCFM000317 | cytoplasmic, membrane-bounded vesicle | details |
TreatCFM000331 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K defense response, incompatible interaction activation of MAPK activity MAP kinase kinase activity MAP kinase activity MAPK cascade MAPK signaling pathway - plant | details |
TreatCFM000332 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups plastid | details |
TreatCFM000351 | lipid transporter activity lipid transport Lysosome | details |
TreatCFM000357 | tRNA dihydrouridine synthesis mitotic spindle assembly checkpoint tRNA dihydrouridine synthase activity Cell cycle | details |
TreatCFM000369 | mitotic spindle assembly checkpoint Cell cycle Transcription_related, Transcription factor: bZIP carbohydrate binding | details |
TreatCFM000385 | xyloglucan biosynthetic process endomembrane system organization fucose biosynthetic process | details |
TreatCFM000392 | translational initiation translation initiation factor activity viral replication complex formation and maintenance xyloglucan biosynthesis Transcription_related, Transcription regulator: SWI/SNF-BAF60b formation of glycosidic bonds, GlycosylTransferases: GTnc Ribosome biogenesis in eukaryotes ribosome biogenesis plant-type vacuole membrane GTPase activity | details |
TreatCFM000427 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K activation of MAPK activity defense response, incompatible interaction MAP kinase kinase activity Cyanoamino acid metabolism nitrate transport response to nitrate electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity MAP kinase activity photosynthetic electron transport in photosystem II | details |
TreatCFM000434 | ADP dimethylallyltransferase activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds ATP dimethylallyltransferase activity | details |
TreatCFM000437 | histone methyltransferase activity (H3-K27 specific) DNA mediated transformation histone H3-K27 methylation regulation of DNA replication mitotic spindle assembly checkpoint Cell cycle Transcription_related, Transcription factor: bZIP Transcription_related, Transcription regulator: SET pollen development | details |
TreatCFM000460 | details | |
TreatCFM000476 | aerobic respiration electron transport chain Oxidative phosphorylation translational initiation hydrogen ion transmembrane transport | details |
TreatCFM000502 | histone methyltransferase activity (H3-K27 specific) regulation of DNA replication mitotic spindle assembly checkpoint DNA mediated transformation histone H3-K27 methylation Cell cycle Transcription_related, Transcription factor: bZIP Transcription_related, Transcription regulator: SET pollen development | details |
TreatCFM000518 | alkaloid biosynthetic process nitrogen compound metabolic process ajmaline and sarpagine biosynthesis vomilenine glucosyltransferase activity strictosidine beta-glucosidase activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds raucaffricine beta-glucosidase activity phospholipid binding | details |
TreatCFM000613 | Ubiquitin_Proteasome_system, DUB: JAMM proteasome complex precatalytic spliceosome COP9 signalosome cullin deneddylation proteasome-mediated ubiquitin-dependent protein catabolic process response to salt stress Proteasome | details |
TreatCFM000619 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups plastid | details |
TreatCFM000624 | xyloglucan biosynthetic process endomembrane system organization fucose biosynthetic process production of siRNA involved in RNA interference RNA phosphodiester bond hydrolysis formation of glycosidic bonds, GlycosylTransferases: GTnc RISC complex integral component of Golgi membrane salicylic acid mediated signaling pathway unidimensional cell growth aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis ribonuclease III activity translational initiation translation initiation factor activity transferase activity, transferring glycosyl groups | details |
TreatCFM000636 | mitotic spindle assembly checkpoint Cell cycle Transcription_related, Transcription factor: bZIP | details |
TreatCFM000642 | mitotic spindle assembly checkpoint Cell cycle Transcription_related, Transcription factor: bZIP | details |
TreatCFM000645 | carbohydrate binding | details |
TreatCFM000675 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:4.1.4: MAP2K endomembrane system organization fucose biosynthetic process xyloglucan biosynthetic process defense response, incompatible interaction activation of MAPK activity MAP kinase kinase activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds cell wall macromolecule catabolic process | details |
TreatCFM000702 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K fucose biosynthetic process defense response, incompatible interaction endomembrane system organization xyloglucan biosynthetic process activation of MAPK activity formation of glycosidic bonds, GlycosylTransferases: GTnc MAP kinase kinase activity aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis integral component of Golgi membrane salicylic acid mediated signaling pathway MAP kinase activity unidimensional cell growth MAPK cascade | details |
TreatCFM000725 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K defense response, incompatible interaction activation of MAPK activity MAP kinase kinase activity MAP kinase activity MAPK cascade MAPK signaling pathway - plant | details |
TreatCFM000750 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K activation of MAPK activity defense response, incompatible interaction MAP kinase kinase activity MAP kinase activity MAPK cascade MAPK signaling pathway - plant | details |
TreatCFM000753 | details | |
TreatCFM000764 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K activation of MAPK activity defense response, incompatible interaction MAP kinase kinase activity | details |
TreatCFM000765 | cytoplasmic, membrane-bounded vesicle | details |
TreatCFM000774 | COP9 signalosome cullin deneddylation Ubiquitin_Proteasome_system, DUB: JAMM | details |
TreatCFM000782 | small GTPase mediated signal transduction GTP binding intracellular | details |
TreatCFM000785 | mitotic spindle assembly checkpoint Oxidative phosphorylation | details |
TreatCFM000786 | details | |
TreatCFM000794 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K defense response, incompatible interaction activation of MAPK activity MAP kinase kinase activity MAP kinase activity MAPK cascade MAPK signaling pathway - plant | details |
TreatCFM000829 | Ubiquitin_Proteasome_system, DUB: JAMM cullin deneddylation COP9 signalosome carbohydrate transport | details |
TreatCFM000833 | Protein_kinases_phosphatases, PPC:1.6.2: Plant External Response Like Kinase RNA lariat debranching enzyme activity NF-kappa B signaling pathway | details |
TreatCFM000835 | details | |
TreatCFM000862 | mitotic spindle assembly checkpoint Transcription_related, Transcription factor: bZIP Apelin signaling pathway Cell cycle | details |
TreatCFM000872 | mitotic spindle assembly checkpoint Transcription_related, Transcription factor: bZIP Apelin signaling pathway Cell cycle | details |
TreatCFM000906 | Transcription_related, Transcription factor: TCP electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity photosynthetic electron transport in photosystem II translational initiation translation initiation factor activity | details |
TreatCFM000961 | mitotic spindle assembly checkpoint Cell cycle Transcription_related, Transcription factor: bZIP Ubiquitin_Proteasome_system, DUB: USP | details |
TreatCFM000969 | cytoplasmic, membrane-bounded vesicle | details |
TreatCFM000971 | mitotic spindle assembly checkpoint Protein_kinases_phosphatases, PPC:1.4.1: Crinkly 4 Like Kinase Transcription_related, Transcription factor: bZIP Cell cycle NF-kappa B signaling pathway | details |
TreatCFM000994 | mitotic spindle assembly checkpoint Cell cycle Transcription_related, Transcription factor: bZIP | details |
TreatCFM001014 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups plastid | details |
TreatCFM001037 | vacuole | details |
TreatCFM001075 | mitotic spindle assembly checkpoint Cell cycle Transcription_related, Transcription factor: bZIP | details |
TreatCFM001076 | mitotic spindle assembly checkpoint ATP synthesis coupled electron transport Transcription_related, Transcription factor: bZIP NADH dehydrogenase (ubiquinone) activity mitochondrion | details |
TreatCFM001108 | translation initiation factor activity xyloglucan biosynthesis osmosensor activity histidine phosphotransfer kinase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: Orphans stomatal complex patterning DNA-dependent ATPase activity phosphorelay sensor kinase activity damaged DNA binding eukaryotic 48S preinitiation complex eukaryotic translation initiation factor 3 complex eukaryotic 43S preinitiation complex seed maturation response to osmotic stress regulation of translational initiation response to water deprivation phosphorelay signal transduction system signal transduction by protein phosphorylation formation of translation preinitiation complex translational initiation DNA repair helicase activity | details |
TreatCFM001175 | mitotic spindle assembly checkpoint Cell cycle Transcription_related, Transcription factor: bZIP | details |
TreatCFM001222 | intracellular protein transport | details |
TreatCFM001233 | translational initiation translation initiation factor activity | details |
TreatCFM001234 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups plastid | details |
TreatCFM001255 | translational initiation translation initiation factor activity | details |
TreatCFM001261 | translational initiation Transcription_related, Transcription factor: TCP Ubiquitin mediated proteolysis translation initiation factor activity | details |
TreatCFM001265 | details | |
TreatCFM001327 | cell tip growth amylopectin biosynthetic process starch biosynthesis acyl binding alpha-1,4-glucan synthase activity starch synthase activity starch biosynthetic process glycogen (starch) synthase activity formation of glycosidic bonds, GlycosylTransferases: GTnc protein-cysteine S-palmitoyltransferase activity ATP-dependent helicase activity AMPK signaling pathway Fanconi anemia pathway Ubiquitin_Proteasome_system, E2: UBC | details |
TreatCFM001410 | polyamine transmembrane transport mitotic spindle assembly checkpoint Transcription_related, Transcription factor: bZIP cellular metabolic process amino acid transmembrane transport L-amino acid transmembrane transporter activity polyamine transmembrane transporter activity Cell cycle | details |
TreatCFM001569 | mitotic spindle assembly checkpoint Cell cycle Transcription_related, Transcription factor: bZIP intracellular membrane-bounded organelle | details |
TreatCFM001573 | phosphate-containing compound metabolic process cellular protein modification process translational initiation | details |
TreatCFM001637 | Ubiquitin_Proteasome_system, DUB: JAMM rosmarinic acid biosynthesis I rosmarinic acid biosynthesis II 4-hydroxybenzoate biosynthesis I (eukaryotes) rRNA primary transcript binding oligosaccharyltransferase complex COP9 signalosome maturation of LSU-rRNA maturation of 5.8S rRNA protein N-linked glycosylation cullin deneddylation oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor ribosomal large subunit assembly NAD binding preribosome, large subunit precursor N-Glycan biosynthesis embryo development ending in seed dormancy | details |
TreatCFM001640 | trans-Golgi network outer membrane-bounded periplasmic space Calcium signaling pathway MAPK signaling pathway early endosome manganese ion homeostasis manganese-transporting ATPase activity manganese ion transmembrane transport cell plate assembly cytochrome complex assembly calcium ion transmembrane transport ATP binding calcium-transporting ATPase activity RNA secondary structure unwinding root development translational initiation | details |
TreatCFM001694 | Protein_kinases_phosphatases, PPC:1.2.1: Receptor Like Cytoplasmic Kinase VIII outer membrane-bounded periplasmic space clathrin adaptor complex Fanconi anemia pathway Lysosome cellular response to DNA damage stimulus cytochrome complex assembly DNA metabolic process | details |
TreatCFM001827 | Fanconi anemia pathway RNA lariat debranching enzyme activity Endocytosis DNA metabolic process RNA phosphodiester bond hydrolysis, endonucleolytic mRNA splicing, via spliceosome DNA biosynthetic process translational initiation cellular response to DNA damage stimulus positive regulation of GTPase activity DNA repair embryo development ending in seed dormancy nucleotidyltransferase activity GTPase activator activity | details |
Expression profiles
Show details about module gene expression profiling |