TreatCFM000488's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Ribosome biogenesis in eukaryotes | 9.52E-05 | KEGG pathway |
| CURI complex | 0.003036347 | GO:0032545 |
| UTP-C complex | 0.003036347 | GO:0034456 |
| maturation of SSU-rRNA | 0.009253238 | GO:0030490 |
| ribosomal small subunit assembly | 0.009253238 | GO:0000028 |
| rRNA processing | 0.013290057 | GO:0006364 |
| Transcription_related, Transcription factor: HSF | 0.013627286 | TF family |
| Transcription_related, Transcription factor: TCP | 0.013627286 | TF family |
| transferase activity, transferring acyl groups | 0.028087537 | GO:0016746 |
| small-subunit processome | 0.038976441 | GO:0032040 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000653 | AT1G32330 (1.00E-37) | ATHSFA1D|heat shock transcription factor A1D |
| CRO_T001081 | AT4G02400 (1.00E-72) | U3 ribonucleoprotein (Utp) family protein |
| CRO_T006504 | AT3G18620 (4.00E-18) | DHHC-type zinc finger family protein |
| CRO_T006558 | AT1G69690 (7.00E-33) | TCP15|TEOSINTE BRANCHED1/CYCLOIDEA/PCF 15 |
| CRO_T027851 | AT5G38720 (4.00E-46) | unknown protein |
| CRO_T028491 | AT1G08710 (3.00E-53) | F-box family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000095 | defense response, incompatible interaction activation of MAPK activity Protein_kinases_phosphatases, PPC:4.1.4: MAP2K lipid transport MAP kinase kinase activity lipid transporter activity Base excision repair Lysosome MAPK cascade MAP kinase activity | details |
| TreatCFM000150 | peptidase activity | details |
| TreatCFM000716 | CURI complex UTP-C complex Protein_kinases_phosphatases, PPC:4.5.1.1: Male grem cell-associated kinase (mak) Transcription_related, Transcription factor: ARR-B transcription factor activity, sequence-specific DNA binding cyclin-dependent protein serine/threonine kinase activity transcription, DNA-templated positive regulation of anthocyanin metabolic process gibberellic acid mediated signaling pathway regulation of photomorphogenesis positive regulation of circadian rhythm regulation of cell cycle red, far-red light phototransduction Transcription_related, Transcription factor: bZIP response to UV-B ribosomal small subunit assembly regulation of transcription, DNA-templated Circadian rhythm - plant double-stranded DNA binding phosphorelay signal transduction system rRNA processing nucleus response to abscisic acid Ribosome biogenesis in eukaryotes | details |
| TreatCFM001283 | maturation of SSU-rRNA Ribosome biogenesis in eukaryotes small-subunit processome nucleolus response to cytokinin thylakoid | details |
Expression profiles
 Show details about module gene expression profiling |