TreatCFM000527's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| chromosome organization | 0.011369337 | GO:0051276 |
| Cell cycle | 0.024739944 | KEGG pathway |
| Ribosome biogenesis in eukaryotes | 0.026181577 | KEGG pathway |
| cell redox homeostasis | 0.042951488 | GO:0045454 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002384 | AT4G30350 (0) | SMXL2|SMAX1-like 2 |
| CRO_T003947 | AT1G01550 (5.00E-104) | BPS1|BYPASS 1 |
| CRO_T004832 | AT1G06750 (0) | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| CRO_T006150 | AT5G13810 (3.00E-74) | Glutaredoxin family protein |
| CRO_T009515 | AT2G24020 (5.00E-26) | Uncharacterised BCR, YbaB family COG0718 |
| CRO_T010827 | AT1G15420 (2.00E-51) | |
| CRO_T027912 | AT1G30690 (1.00E-77) | Sec14p-like phosphatidylinositol transfer family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000177 | flavin biosynthesis I (bacteria and plants) 6,7-dimethyl-8-ribityllumazine synthase activity riboflavin synthase complex Riboflavin metabolism riboflavin biosynthetic process regulation of stomatal opening Ribosome biogenesis in eukaryotes response to biotic stimulus drug transmembrane transport defense response | details |
| TreatCFM000263 | DNA binding cytokinin-O-glucosides biosynthesis nucleus Transcription_related, Transcription factor: SBP transcription factor activity, sequence-specific DNA binding transcription, DNA-templated regulation of transcription, DNA-templated flower development | details |
| TreatCFM000312 | ABC transporters Ribosome biogenesis in eukaryotes microtubule-based movement ATPase activity microtubule motor activity microtubule binding ATPase activity, coupled to transmembrane movement of substances | details |
| TreatCFM000800 | secondary active sulfate transmembrane transporter activity sulfate transmembrane transport sucrose synthase activity sucrose metabolic process formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: C2C2-Dof Ribosome biogenesis in eukaryotes Starch and sucrose metabolism | details |
| TreatCFM000808 | Transcription_related, Transcription factor: SBP UDP-α-D-glucuronate biosynthesis (from myo-inositol) transcription factor activity, sequence-specific DNA binding transcription, DNA-templated Ascorbate and aldarate metabolism Fatty acid metabolism regulation of transcription, DNA-templated flower development cytokinin-O-glucosides biosynthesis very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II DNA binding flavonoid biosynthetic process flavonoid glucuronidation quercetin 7-O-glucosyltransferase activity quercetin 3-O-glucosyltransferase activity | details |
| TreatCFM000915 | Protein_kinases_phosphatases, PPC:4.5.4: GSK3/Shaggy Like Protein Kinase Family Ribosome biogenesis in eukaryotes cell part transmembrane transporter activity | details |
| TreatCFM001006 | integral component of membrane endoplasmic reticulum-Golgi intermediate compartment nucleotide transmembrane transport purine nucleotide-sugar transmembrane transport UDP-glucose transport 3-oxo-5-alpha-steroid 4-dehydrogenase activity enoyl-[acyl-carrier-protein] reductase (NADH) activity nucleotide-sugar transmembrane transporter activity transmembrane transport spermine and spermidine degradation III Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II | details |
| TreatCFM001240 | Protein_kinases_phosphatases, PPC:2.1.1: Light Sensor Kinase protein kinase activity chromosome organization protein phosphorylation Protein_kinases_phosphatases, PPC:1.7.2: Domain of Unknown Function 26 (DUF26) Kinase cation binding Cell cycle Ribosome biogenesis in eukaryotes phosphoprotein phosphatase activity serine-type endopeptidase activity | details |
| TreatCFM001299 | glycolipid translocation thiol-dependent ubiquitinyl hydrolase activity lipid transporter activity ubiquitin conjugating enzyme binding positive regulation of proteasomal ubiquitin-dependent protein catabolic process protein deubiquitination protein polyubiquitination protein ubiquitination involved in ubiquitin-dependent protein catabolic process ubiquitin-dependent protein catabolic process cytoplasm ubiquitin ligase complex Ribosome biogenesis in eukaryotes | details |
| TreatCFM001300 | glycolipid translocation Hippo signaling pathway -fly thiol-dependent ubiquitinyl hydrolase activity protein-cysteine S-palmitoyltransferase activity lipid transporter activity protein deubiquitination Ribosome biogenesis in eukaryotes ubiquitin-dependent protein catabolic process | details |
| TreatCFM001432 | saponin biosynthesis III non-hydrolytic cleavage of glycosidic bonds, Polysaccharide Lyases: PL4 Ribosome biogenesis in eukaryotes | details |
| TreatCFM001487 | Ribosome biogenesis in eukaryotes RNA transport | details |
| TreatCFM001582 | non-hydrolytic cleavage of glycosidic bonds, Polysaccharide Lyases: PL4 Transcription_related, Transcription factor: Trihelix Ribosome biogenesis in eukaryotes protein dephosphorylation | details |
| TreatCFM001672 | sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity Transcription_related, Transcription factor: Trihelix plant sterol biosynthesis steroid biosynthetic process 3-beta-hydroxy-delta5-steroid dehydrogenase activity Ribosome biogenesis in eukaryotes protein serine/threonine phosphatase activity protein dephosphorylation | details |
Expression profiles
 Show details about module gene expression profiling |