TreatCFM000800's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| secondary active sulfate transmembrane transporter activity | 0.003454893 | GO:0008271 |
| sulfate transmembrane transport | 0.003454893 | GO:1902358 |
| sucrose synthase activity | 0.003454893 | GO:0016157 |
| sucrose metabolic process | 0.003454893 | GO:0005985 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.006373082 | cazy family |
| Transcription_related, Transcription factor: C2C2-Dof | 0.006373082 | TF family |
| Ribosome biogenesis in eukaryotes | 0.034773441 | KEGG pathway |
| Starch and sucrose metabolism | 0.034773441 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T007112 | AT1G28310 (1.00E-30) | Dof-type zinc finger DNA-binding family protein |
| CRO_T010827 | AT1G15420 (2.00E-51) | |
| CRO_T016606 | AT3G51895 (7.00E-122) | SULTR3; 1|sulfate transporter 3; 1 |
| CRO_T016709 | AT1G73370 (0) | ATSUS6|SUCROSE SYNTHASE 6 |
| CRO_T028630 | AT2G42040 (1.00E-17) | |
| CRO_T030088 | AT1G67050 (3.00E-11) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000177 | flavin biosynthesis I (bacteria and plants) 6,7-dimethyl-8-ribityllumazine synthase activity riboflavin synthase complex Riboflavin metabolism riboflavin biosynthetic process regulation of stomatal opening Ribosome biogenesis in eukaryotes response to biotic stimulus drug transmembrane transport defense response | details |
| TreatCFM000312 | ABC transporters Ribosome biogenesis in eukaryotes microtubule-based movement ATPase activity microtubule motor activity microtubule binding ATPase activity, coupled to transmembrane movement of substances | details |
| TreatCFM000527 | chromosome organization Cell cycle Ribosome biogenesis in eukaryotes cell redox homeostasis | details |
| TreatCFM000801 | Transcription_related, Transcription factor: C2C2-Dof Antigen processing and presentation metal ion transport cellular transition metal ion homeostasis sulfate transmembrane transport zinc II ion transmembrane transport | details |
| TreatCFM000915 | Protein_kinases_phosphatases, PPC:4.5.4: GSK3/Shaggy Like Protein Kinase Family Ribosome biogenesis in eukaryotes cell part transmembrane transporter activity | details |
| TreatCFM001006 | integral component of membrane endoplasmic reticulum-Golgi intermediate compartment nucleotide transmembrane transport purine nucleotide-sugar transmembrane transport UDP-glucose transport 3-oxo-5-alpha-steroid 4-dehydrogenase activity enoyl-[acyl-carrier-protein] reductase (NADH) activity nucleotide-sugar transmembrane transporter activity transmembrane transport spermine and spermidine degradation III Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II | details |
| TreatCFM001168 | Antigen processing and presentation glycosaminoglycan biosynthetic process heparan sulfate proteoglycan biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:4.4.1: Unknown Function Kinase Transcription_related, Transcription factor: C2C2-Dof cellular protein metabolic process single-organism process cellular transition metal ion homeostasis metal ion transport adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | details |
| TreatCFM001240 | Protein_kinases_phosphatases, PPC:2.1.1: Light Sensor Kinase protein kinase activity chromosome organization protein phosphorylation Protein_kinases_phosphatases, PPC:1.7.2: Domain of Unknown Function 26 (DUF26) Kinase cation binding Cell cycle Ribosome biogenesis in eukaryotes phosphoprotein phosphatase activity serine-type endopeptidase activity | details |
| TreatCFM001299 | glycolipid translocation thiol-dependent ubiquitinyl hydrolase activity lipid transporter activity ubiquitin conjugating enzyme binding positive regulation of proteasomal ubiquitin-dependent protein catabolic process protein deubiquitination protein polyubiquitination protein ubiquitination involved in ubiquitin-dependent protein catabolic process ubiquitin-dependent protein catabolic process cytoplasm ubiquitin ligase complex Ribosome biogenesis in eukaryotes | details |
| TreatCFM001300 | glycolipid translocation Hippo signaling pathway -fly thiol-dependent ubiquitinyl hydrolase activity protein-cysteine S-palmitoyltransferase activity lipid transporter activity protein deubiquitination Ribosome biogenesis in eukaryotes ubiquitin-dependent protein catabolic process | details |
| TreatCFM001302 | 1,3-β-D-glucan biosynthesis purine nucleobase transmembrane transport sucrose metabolic process (1->3)-beta-D-glucan biosynthetic process purine nucleobase transmembrane transporter activity formation of glycosidic bonds, GlycosylTransferases: GTnc Starch and sucrose metabolism 1,3-beta-D-glucan synthase activity sucrose synthase activity RNA secondary structure unwinding 1,3-beta-D-glucan synthase complex Transcription_related, Transcription factor: HB flavonoid glucuronidation flavonoid biosynthetic process | details |
| TreatCFM001341 | salicylate glucosides biosynthesis II salvigenin biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: C2C2-Dof quercetin glucoside biosynthesis (Allium) quercetin gentiotetraside biosynthesis Starch and sucrose metabolism sucrose metabolic process aromatic compound biosynthetic process sucrose synthase activity O-methyltransferase activity spindle phragmoplast quercetin 3-O-glucosyltransferase activity quercetin 7-O-glucosyltransferase activity S-adenosylmethionine-dependent methyltransferase activity | details |
| TreatCFM001432 | saponin biosynthesis III non-hydrolytic cleavage of glycosidic bonds, Polysaccharide Lyases: PL4 Ribosome biogenesis in eukaryotes | details |
| TreatCFM001487 | Ribosome biogenesis in eukaryotes RNA transport | details |
| TreatCFM001582 | non-hydrolytic cleavage of glycosidic bonds, Polysaccharide Lyases: PL4 Transcription_related, Transcription factor: Trihelix Ribosome biogenesis in eukaryotes protein dephosphorylation | details |
| TreatCFM001672 | sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity Transcription_related, Transcription factor: Trihelix plant sterol biosynthesis steroid biosynthetic process 3-beta-hydroxy-delta5-steroid dehydrogenase activity Ribosome biogenesis in eukaryotes protein serine/threonine phosphatase activity protein dephosphorylation | details |
| TreatCFM001674 | Transcription_related, Transcription factor: Trihelix plant sterol biosynthesis sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 3-beta-hydroxy-delta5-steroid dehydrogenase activity steroid biosynthetic process ribosomal large subunit assembly Protein processing in endoplasmic reticulum unfolded protein binding protein serine/threonine phosphatase activity response to stress | details |
| TreatCFM001762 | salvigenin biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc sucrose metabolic process aromatic compound biosynthetic process sucrose synthase activity O-methyltransferase activity Starch and sucrose metabolism S-adenosylmethionine-dependent methyltransferase activity spindle phragmoplast | details |
| TreatCFM001964 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription factor: C2C2-Dof maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) metal ion transport ribosomal large subunit assembly cellular transition metal ion homeostasis | details |
Expression profiles
 Show details about module gene expression profiling |