TreatCFM001006's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| integral component of membrane | 0.006514417 | GO:0016021 |
| endoplasmic reticulum-Golgi intermediate compartment | 0.006514417 | GO:0005793 |
| nucleotide transmembrane transport | 0.010703278 | GO:1901679 |
| purine nucleotide-sugar transmembrane transport | 0.010703278 | GO:0090480 |
| UDP-glucose transport | 0.010703278 | GO:0015786 |
| 3-oxo-5-alpha-steroid 4-dehydrogenase activity | 0.011536196 | GO:0003865 |
| enoyl-[acyl-carrier-protein] reductase (NADH) activity | 0.011536196 | GO:0004318 |
| nucleotide-sugar transmembrane transporter activity | 0.011536196 | GO:0005338 |
| transmembrane transport | 0.016196751 | GO:0055085 |
| spermine and spermidine degradation III | 0.021095776 | plantCyc |
| Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII | 0.028301917 | kinase family |
| very long chain fatty acid biosynthesis I | 0.035450019 | plantCyc |
| very long chain fatty acid biosynthesis II | 0.035450019 | plantCyc |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000062 | AT5G62170 (4.00E-30) | TRM25|TON1 Recruiting Motif 25 |
| CRO_T000373 | AT1G02520 (0) | ABCB11|ATP-binding cassette B11; MDR8|multi-drug resistance 8; PGP11|P-glycoprotein 11 |
| CRO_T002314 | AT1G21070 (6.00E-148) | Nucleotide-sugar transporter family protein |
| CRO_T008382 | - | - |
| CRO_T010827 | AT1G15420 (2.00E-51) | |
| CRO_T014339 | AT5G61480 (2.00E-132) | PXY|PHLOEM INTERCALATED WITH XYLEM; TDR|TDIF receptor |
| CRO_T014803 | AT1G26910 (1.00E-112) | RPL10B|ribosomal protein L10 B |
| CRO_T021354 | AT5G07050 (2.00E-134) | UMAMIT9|Usually multiple acids move in and out Transporters 9 |
| CRO_T022651 | AT3G58770 (2.00E-11) | unknown protein |
| CRO_T023845 | AT3G13682 (7.00E-23) | LDL2|LSD1-like2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000177 | flavin biosynthesis I (bacteria and plants) 6,7-dimethyl-8-ribityllumazine synthase activity riboflavin synthase complex Riboflavin metabolism riboflavin biosynthetic process regulation of stomatal opening Ribosome biogenesis in eukaryotes response to biotic stimulus drug transmembrane transport defense response | details |
| TreatCFM000312 | ABC transporters Ribosome biogenesis in eukaryotes microtubule-based movement ATPase activity microtubule motor activity microtubule binding ATPase activity, coupled to transmembrane movement of substances | details |
| TreatCFM000527 | chromosome organization Cell cycle Ribosome biogenesis in eukaryotes cell redox homeostasis | details |
| TreatCFM000800 | secondary active sulfate transmembrane transporter activity sulfate transmembrane transport sucrose synthase activity sucrose metabolic process formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: C2C2-Dof Ribosome biogenesis in eukaryotes Starch and sucrose metabolism | details |
| TreatCFM000801 | Transcription_related, Transcription factor: C2C2-Dof Antigen processing and presentation metal ion transport cellular transition metal ion homeostasis sulfate transmembrane transport zinc II ion transmembrane transport | details |
| TreatCFM000915 | Protein_kinases_phosphatases, PPC:4.5.4: GSK3/Shaggy Like Protein Kinase Family Ribosome biogenesis in eukaryotes cell part transmembrane transporter activity | details |
| TreatCFM001240 | Protein_kinases_phosphatases, PPC:2.1.1: Light Sensor Kinase protein kinase activity chromosome organization protein phosphorylation Protein_kinases_phosphatases, PPC:1.7.2: Domain of Unknown Function 26 (DUF26) Kinase cation binding Cell cycle Ribosome biogenesis in eukaryotes phosphoprotein phosphatase activity serine-type endopeptidase activity | details |
| TreatCFM001299 | glycolipid translocation thiol-dependent ubiquitinyl hydrolase activity lipid transporter activity ubiquitin conjugating enzyme binding positive regulation of proteasomal ubiquitin-dependent protein catabolic process protein deubiquitination protein polyubiquitination protein ubiquitination involved in ubiquitin-dependent protein catabolic process ubiquitin-dependent protein catabolic process cytoplasm ubiquitin ligase complex Ribosome biogenesis in eukaryotes | details |
| TreatCFM001300 | glycolipid translocation Hippo signaling pathway -fly thiol-dependent ubiquitinyl hydrolase activity protein-cysteine S-palmitoyltransferase activity lipid transporter activity protein deubiquitination Ribosome biogenesis in eukaryotes ubiquitin-dependent protein catabolic process | details |
| TreatCFM001432 | saponin biosynthesis III non-hydrolytic cleavage of glycosidic bonds, Polysaccharide Lyases: PL4 Ribosome biogenesis in eukaryotes | details |
| TreatCFM001487 | Ribosome biogenesis in eukaryotes RNA transport | details |
| TreatCFM001506 | receptor serine/threonine kinase binding kinase activity meristem development phosphorylation secologanin and strictosidine biosynthesis transmembrane receptor protein tyrosine kinase activity Protein_kinases_phosphatases, PPC:1.12.2: Leucine Rich Repeat Kinase II & X Transcription_related, Transcription factor: C2C2-Dof | details |
| TreatCFM001582 | non-hydrolytic cleavage of glycosidic bonds, Polysaccharide Lyases: PL4 Transcription_related, Transcription factor: Trihelix Ribosome biogenesis in eukaryotes protein dephosphorylation | details |
| TreatCFM001672 | sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity Transcription_related, Transcription factor: Trihelix plant sterol biosynthesis steroid biosynthetic process 3-beta-hydroxy-delta5-steroid dehydrogenase activity Ribosome biogenesis in eukaryotes protein serine/threonine phosphatase activity protein dephosphorylation | details |
| TreatCFM001872 | spermine and spermidine degradation III hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc mRNA cap binding complex mRNA (guanine-N7-)-methyltransferase activity ribonuclease P activity trehalose-phosphatase activity RNA (guanine-N7)-methylation 7-methylguanosine mRNA capping protein lipoylation malate transmembrane transport malate transmembrane transporter activity trehalose biosynthetic process tRNA processing Transcription_related, Transcription factor: bHLH RNA phosphodiester bond hydrolysis, endonucleolytic | details |
| TreatCFM001964 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription factor: C2C2-Dof maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) metal ion transport ribosomal large subunit assembly cellular transition metal ion homeostasis | details |
Expression profiles
 Show details about module gene expression profiling |