TreatCFM000535's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Protein_kinases_phosphatases, PPC:4.1.1: MAP3K | 0.002686583 | kinase family |
| Ribosome | 0.012367604 | KEGG pathway |
| 90S preribosome | 0.026962696 | GO:0030686 |
| cis-Golgi network | 0.026962696 | GO:0005801 |
| ribosomal small subunit biogenesis | 0.02724822 | GO:0042274 |
| maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.02724822 | GO:0000463 |
| Protein export | 0.027469342 | KEGG pathway |
| SNARE interactions in vesicular transport | 0.027469342 | KEGG pathway |
| MAPK cascade | 0.035365472 | GO:0000165 |
| activation of MAPKK activity | 0.035365472 | GO:0000186 |
| rRNA processing | 0.035365472 | GO:0006364 |
| ER to Golgi vesicle-mediated transport | 0.035365472 | GO:0006888 |
| cytoplasmic translation | 0.035365472 | GO:0002181 |
| protein transport | 0.037707456 | GO:0015031 |
| structural constituent of ribosome | 0.04205271 | GO:0003735 |
| MAP kinase kinase kinase activity | 0.04205271 | GO:0004709 |
| poly(A) RNA binding | 0.04205271 | GO:0044822 |
| MAPK signaling pathway - plant | 0.04695429 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004348 | AT1G48830 (3.00E-44) | Ribosomal protein S7e family protein |
| CRO_T005901 | - | - |
| CRO_T008488 | AT1G63700 (4.00E-77) | EMB71|EMBRYO DEFECTIVE 71; MAPKKK4|MAP KINASE KINASE KINASE 4; YDA|YODA |
| CRO_T019723 | AT5G28540 (6.00E-147) | BIP1|heat shock protein 70 (Hsp 70) family protein |
| CRO_T028535 | AT1G51380 (2.00E-12) | DEA(D/H)-box RNA helicase family protein |
| CRO_T030179 | AT2G45200 (1.00E-11) | GOS12|golgi snare 12 |
| CRO_T030794 | AT2G44120 (2.00E-88) | Ribosomal protein L30/L7 family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000465 | Protein_kinases_phosphatases, PPC:4.1.1: MAP3K | details |
| TreatCFM001141 | Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) tRNA modification cytoplasmic translation Transcription_related, Transcription factor: NF-YC Transcription_related, Transcription regulator: PHD | details |
| TreatCFM001164 | cytosolic large ribosomal subunit maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) ubiquitin ligase complex Ribosome cytoplasmic translation poly(A) RNA binding Protein_kinases_phosphatases, PPC:2.2.1: Unknown Function Kinase structural constituent of ribosome ATG1/ULK1 kinase complex pre-autophagosomal structure membrane positive regulation of protein phosphorylation positive regulation of ubiquitin-protein transferase activity cullin family protein binding ubiquitin-ubiquitin ligase activity ubiquitin-like protein binding autophagosome assembly protein neddylation Autophagy - yeast ubiquitin conjugating enzyme binding protein kinase binding ATP-dependent peptidase activity Ubiquitin_Proteasome_system, E3: U-box | details |
| TreatCFM001192 | formamidase activity cis-Golgi network Golgi membrane Transcription_related, Transcription factor: bZIP Transcription_related, Transcription factor: HB abscisic acid-activated signaling pathway response to water deprivation ER to Golgi vesicle-mediated transport protein transport response to salt stress protein binding SNARE interactions in vesicular transport | details |
| TreatCFM001406 | UDP-N-acetyl-D-glucosamine biosynthesis II glucosamine 6-phosphate N-acetyltransferase activity Ribosome Protein_kinases_phosphatases, PPC:4.1.1: MAP3K Transcription_related, Transcription regulator: GNAT structural constituent of ribosome UDP-N-acetylglucosamine biosynthetic process ribosomal small subunit biogenesis maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) MAP kinase kinase kinase activity poly(A) RNA binding cis-Golgi network 90S preribosome activation of MAPKK activity cytoplasmic translation MAPK cascade ER to Golgi vesicle-mediated transport rRNA processing SNARE interactions in vesicular transport protein transport Transcription_related, Transcription factor: ERF protein binding Amino sugar and nucleotide sugar metabolism MAPK signaling pathway - plant cytosolic small ribosomal subunit Golgi membrane small-subunit processome | details |
| TreatCFM001458 | Ribosome structural constituent of ribosome small-subunit processome cytosolic small ribosomal subunit fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent) unsaturated, even numbered fatty acid β-oxidation maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) ribosomal small subunit biogenesis translation 90S preribosome poly(A) RNA binding ribosomal small subunit assembly cytoplasmic translation maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) mRNA surveillance pathway rRNA processing | details |
| TreatCFM001761 | L-serine transmembrane transporter activity transmembrane transport L-serine transport ribosomal small subunit biogenesis cation transport monovalent cation:proton antiporter activity regulation of pH rRNA processing 90S preribosome endomembrane system cytosolic small ribosomal subunit small-subunit processome | details |
Expression profiles
 Show details about module gene expression profiling |