TreatCFM001458's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Ribosome | 6.38E-05 | KEGG pathway |
| structural constituent of ribosome | 0.0002822 | GO:0003735 |
| small-subunit processome | 0.000566449 | GO:0032040 |
| cytosolic small ribosomal subunit | 0.000566449 | GO:0022627 |
| fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent) | 0.004958527 | plantCyc |
| unsaturated, even numbered fatty acid β-oxidation | 0.004958527 | plantCyc |
| maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.013484934 | GO:0000463 |
| ribosomal small subunit biogenesis | 0.013484934 | GO:0042274 |
| translation | 0.013484934 | GO:0006412 |
| 90S preribosome | 0.015004864 | GO:0030686 |
| poly(A) RNA binding | 0.020645881 | GO:0044822 |
| ribosomal small subunit assembly | 0.021332225 | GO:0000028 |
| cytoplasmic translation | 0.024669835 | GO:0002181 |
| maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.024669835 | GO:0000462 |
| mRNA surveillance pathway | 0.025875851 | KEGG pathway |
| rRNA processing | 0.026253149 | GO:0006364 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004348 | AT1G48830 (3.00E-44) | Ribosomal protein S7e family protein |
| CRO_T012979 | AT1G20530 (5.00E-38) | Protein of unknown function (DUF630 and DUF632) |
| CRO_T016347 | AT1G56423 (4.00E-71) | unknown protein |
| CRO_T021325 | AT1G65520 (9.00E-74) | ATECI1|DELTA(3), DELTA(2)-ENOYL COA ISOMERASE 1; ECHIC|ENOYL-COA HYDRATASE/ISOMERASE C |
| CRO_T023214 | AT1G72370 (2.00E-78) | P40|40s ribosomal protein SA |
| CRO_T025395 | AT5G01400 (1.00E-61) | ESP4|ENHANCED SILENCING PHENOTYPE 4 |
| CRO_T030794 | AT2G44120 (2.00E-88) | Ribosomal protein L30/L7 family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000049 | fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent) unsaturated, even numbered fatty acid β-oxidation sesaminol glucoside biosynthesis cellular transition metal ion homeostasis metal ion transport maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) flavonoid biosynthetic process flavonoid glucuronidation serine-type peptidase activity transition metal ion binding quercetin 3-O-glucosyltransferase activity quercetin 7-O-glucosyltransferase activity | details |
| TreatCFM000465 | Protein_kinases_phosphatases, PPC:4.1.1: MAP3K | details |
| TreatCFM000535 | Protein_kinases_phosphatases, PPC:4.1.1: MAP3K Ribosome 90S preribosome cis-Golgi network ribosomal small subunit biogenesis maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Protein export SNARE interactions in vesicular transport MAPK cascade activation of MAPKK activity rRNA processing ER to Golgi vesicle-mediated transport cytoplasmic translation protein transport structural constituent of ribosome MAP kinase kinase kinase activity poly(A) RNA binding MAPK signaling pathway - plant | details |
| TreatCFM001141 | Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) tRNA modification cytoplasmic translation Transcription_related, Transcription factor: NF-YC Transcription_related, Transcription regulator: PHD | details |
| TreatCFM001164 | cytosolic large ribosomal subunit maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) ubiquitin ligase complex Ribosome cytoplasmic translation poly(A) RNA binding Protein_kinases_phosphatases, PPC:2.2.1: Unknown Function Kinase structural constituent of ribosome ATG1/ULK1 kinase complex pre-autophagosomal structure membrane positive regulation of protein phosphorylation positive regulation of ubiquitin-protein transferase activity cullin family protein binding ubiquitin-ubiquitin ligase activity ubiquitin-like protein binding autophagosome assembly protein neddylation Autophagy - yeast ubiquitin conjugating enzyme binding protein kinase binding ATP-dependent peptidase activity Ubiquitin_Proteasome_system, E3: U-box | details |
| TreatCFM001406 | UDP-N-acetyl-D-glucosamine biosynthesis II glucosamine 6-phosphate N-acetyltransferase activity Ribosome Protein_kinases_phosphatases, PPC:4.1.1: MAP3K Transcription_related, Transcription regulator: GNAT structural constituent of ribosome UDP-N-acetylglucosamine biosynthetic process ribosomal small subunit biogenesis maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) MAP kinase kinase kinase activity poly(A) RNA binding cis-Golgi network 90S preribosome activation of MAPKK activity cytoplasmic translation MAPK cascade ER to Golgi vesicle-mediated transport rRNA processing SNARE interactions in vesicular transport protein transport Transcription_related, Transcription factor: ERF protein binding Amino sugar and nucleotide sugar metabolism MAPK signaling pathway - plant cytosolic small ribosomal subunit Golgi membrane small-subunit processome | details |
| TreatCFM001761 | L-serine transmembrane transporter activity transmembrane transport L-serine transport ribosomal small subunit biogenesis cation transport monovalent cation:proton antiporter activity regulation of pH rRNA processing 90S preribosome endomembrane system cytosolic small ribosomal subunit small-subunit processome | details |
Expression profiles
 Show details about module gene expression profiling |