TreatCFM001141's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase | 0.009445018 | kinase family |
| maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.015505016 | GO:0000463 |
| tRNA modification | 0.016052214 | GO:0006400 |
| cytoplasmic translation | 0.016052214 | GO:0002181 |
| Transcription_related, Transcription factor: NF-YC | 0.016514134 | TF family |
| Transcription_related, Transcription regulator: PHD | 0.025124271 | TF family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005327 | AT3G05670 (6.00E-68) | RING/U-box protein |
| CRO_T016115 | AT1G54830 (1.00E-10) | NF-YC3|nuclear factor Y, subunit C3 |
| CRO_T018329 | AT5G05210 (1.00E-36) | Surfeit locus protein 6 |
| CRO_T020966 | AT2G44430 (5.00E-53) | DNA-binding bromodomain-containing protein |
| CRO_T026075 | AT1G78010 (2.00E-49) | tRNA modification GTPase, putative |
| CRO_T028846 | - | - |
| CRO_T030794 | AT2G44120 (2.00E-88) | Ribosomal protein L30/L7 family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000535 | Protein_kinases_phosphatases, PPC:4.1.1: MAP3K Ribosome 90S preribosome cis-Golgi network ribosomal small subunit biogenesis maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Protein export SNARE interactions in vesicular transport MAPK cascade activation of MAPKK activity rRNA processing ER to Golgi vesicle-mediated transport cytoplasmic translation protein transport structural constituent of ribosome MAP kinase kinase kinase activity poly(A) RNA binding MAPK signaling pathway - plant | details |
| TreatCFM001164 | cytosolic large ribosomal subunit maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) ubiquitin ligase complex Ribosome cytoplasmic translation poly(A) RNA binding Protein_kinases_phosphatases, PPC:2.2.1: Unknown Function Kinase structural constituent of ribosome ATG1/ULK1 kinase complex pre-autophagosomal structure membrane positive regulation of protein phosphorylation positive regulation of ubiquitin-protein transferase activity cullin family protein binding ubiquitin-ubiquitin ligase activity ubiquitin-like protein binding autophagosome assembly protein neddylation Autophagy - yeast ubiquitin conjugating enzyme binding protein kinase binding ATP-dependent peptidase activity Ubiquitin_Proteasome_system, E3: U-box | details |
| TreatCFM001273 | outer membrane-bounded periplasmic space intracellular protoheme IX ABC transporter activity heme-transporting ATPase activity coenzyme A transmembrane transporter activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc homogalacturonan degradation coenzyme A transmembrane transport heme transport cytochrome complex assembly tRNA modification hydrolase activity, acting on glycosyl bonds mitochondrial inner membrane | details |
| TreatCFM001406 | UDP-N-acetyl-D-glucosamine biosynthesis II glucosamine 6-phosphate N-acetyltransferase activity Ribosome Protein_kinases_phosphatases, PPC:4.1.1: MAP3K Transcription_related, Transcription regulator: GNAT structural constituent of ribosome UDP-N-acetylglucosamine biosynthetic process ribosomal small subunit biogenesis maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) MAP kinase kinase kinase activity poly(A) RNA binding cis-Golgi network 90S preribosome activation of MAPKK activity cytoplasmic translation MAPK cascade ER to Golgi vesicle-mediated transport rRNA processing SNARE interactions in vesicular transport protein transport Transcription_related, Transcription factor: ERF protein binding Amino sugar and nucleotide sugar metabolism MAPK signaling pathway - plant cytosolic small ribosomal subunit Golgi membrane small-subunit processome | details |
| TreatCFM001413 | outer membrane-bounded periplasmic space intracellular protoheme IX ABC transporter activity heme-transporting ATPase activity Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase cytochrome complex assembly tRNA modification heme transport Transcription_related, Transcription regulator: PHD | details |
| TreatCFM001414 | protoheme IX ABC transporter activity heme-transporting ATPase activity intracellular outer membrane-bounded periplasmic space coenzyme A transmembrane transporter activity coenzyme A transmembrane transport cytoplasmic mRNA processing body assembly deadenylation-dependent decapping of nuclear-transcribed mRNA RNA degradation heme transport cytochrome complex assembly cytoplasmic mRNA processing body tRNA modification protein peptidyl-prolyl isomerization integral component of membrane peptidyl-prolyl cis-trans isomerase activity mitochondrial inner membrane trans-Golgi network endosome | details |
| TreatCFM001458 | Ribosome structural constituent of ribosome small-subunit processome cytosolic small ribosomal subunit fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent) unsaturated, even numbered fatty acid β-oxidation maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) ribosomal small subunit biogenesis translation 90S preribosome poly(A) RNA binding ribosomal small subunit assembly cytoplasmic translation maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) mRNA surveillance pathway rRNA processing | details |
| TreatCFM001798 | protein heterodimerization activity posttranscriptional gene silencing by RNA production of small RNA involved in gene silencing by RNA Transcription_related, Transcription factor: NF-YC mRNA processing nucleosome nucleus Viral carcinogenesis Inositol phosphate metabolism | details |
| TreatCFM002152 | spermidine synthase activity putrescine N-methyltransferase activity phosphopyruvate hydratase activity phosphopyruvate hydratase complex spermidine biosynthetic process tRNA modification glycolytic process spermidine biosynthesis I gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt Cysteine and methionine metabolism | details |
Expression profiles
 Show details about module gene expression profiling |