TreatCFM000649's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| malate synthase activity | 0.009653685 | GO:0004474 |
| glyoxysome | 0.012141801 | GO:0009514 |
| Protein_kinases_phosphatases, PPC:1.6.4: RKF3 Like Kinase | 0.012141801 | kinase family |
| 3-hydroxyacyl-CoA dehydrogenase activity | 0.014473681 | GO:0003857 |
| Protein_kinases_phosphatases, PPC:3.1.1: Casein Kinase I Family | 0.015166491 | kinase family |
| glyoxylate cycle | 0.019907944 | plantCyc |
| unsaturated, even numbered fatty acid β-oxidation | 0.019907944 | plantCyc |
| fatty acid β-oxidation II (peroxisome) | 0.020620893 | plantCyc |
| fatty acid metabolic process | 0.02930316 | GO:0006631 |
| Wnt signaling pathway | 0.02930316 | KEGG pathway |
| protein serine/threonine kinase activity | 0.029723377 | GO:0004674 |
| regulation of cell shape | 0.030412228 | GO:0008360 |
| Endocytosis | 0.032416716 | KEGG pathway |
| tricarboxylic acid cycle | 0.034864144 | GO:0006099 |
| very long chain fatty acid biosynthesis II | 0.036291537 | plantCyc |
| Fatty acid metabolism | 0.047542591 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004403 | AT2G25490 (7.00E-09) | EBF1|EIN3-binding F box protein 1 |
| CRO_T008497 | AT3G13430 (7.00E-21) | RING/U-box superfamily protein |
| CRO_T008993 | AT1G64810 (1.00E-75) | APO1|ACCUMULATION OF PHOTOSYSTEM ONE 1 |
| CRO_T021381 | AT2G36815 (8.00E-17) | unknown protein |
| CRO_T023199 | AT1G11050 (0) | Protein kinase superfamily protein |
| CRO_T028034 | AT3G06860 (2.00E-160) | ATMFP2|MULTIFUNCTIONAL PROTEIN 2 |
| CRO_T028486 | - | - |
| CRO_T028873 | AT5G03860 (0) | MLS|malate synthase |
| CRO_T029697 | AT5G43320 (1.00E-61) | ckl8|casein kinase I-like 8 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000227 | ErbB signaling pathway Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase metabolic process Fatty acid metabolism | details |
| TreatCFM000228 | PRPP biosynthesis I nucleoside metabolic process nucleotide biosynthetic process ribose phosphate diphosphokinase activity Ubiquitin_Proteasome_system, E3 adaptor: F-box plasma membrane | details |
| TreatCFM000303 | glyoxysome beta-Alanine metabolism pantoate-beta-alanine ligase activity malate synthase activity phosphopantothenate biosynthesis I Protein_kinases_phosphatases, PPC:2.1.4: GmPK6/AtMRK1 Family pantothenate biosynthetic process glyoxylate cycle tricarboxylic acid cycle | details |
| TreatCFM000375 | 3-hydroxyacyl-CoA dehydrogenase activity fatty acid metabolic process unsaturated, even numbered fatty acid β-oxidation fatty acid β-oxidation II (peroxisome) Fatty acid metabolism very long chain fatty acid biosynthesis II formation of glycosidic bonds, GlycosylTransferases: GTnc jasmonic acid biosynthesis ribosome biogenesis transferase activity, transferring acyl groups metal ion binding Ribosome biogenesis in eukaryotes | details |
| TreatCFM000618 | dUDP biosynthetic process dTDP biosynthetic process dTTP biosynthetic process thymidylate kinase activity ethanolamine-phosphate cytidylyltransferase activity | details |
| TreatCFM000917 | beta-Alanine metabolism pantothenate biosynthetic process inositol trisphosphate metabolic process inositol-1,3,4-trisphosphate 6-kinase activity inositol-1,3,4-trisphosphate 5-kinase activity inositol tetrakisphosphate 1-kinase activity pantoate-beta-alanine ligase activity Inositol phosphate metabolism anthocyanin biosynthesis anthocyanin biosynthesis (pelargonidin 3-O-glucoside) lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3) phosphopantothenate biosynthesis I proanthocyanidins biosynthesis from flavanols ethylene biosynthesis I (plants) leucodelphinidin biosynthesis pinobanksin biosynthesis 1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza) Flavonoid biosynthesis flavonoid biosynthesis (in equisetum) | details |
| TreatCFM001002 | sulfite oxidation IV ceramide degradation Protein_kinases_phosphatases, PPC:1.2.1: Receptor Like Cytoplasmic Kinase VIII formation of glycosidic bonds, GlycosylTransferases: GTnc starch metabolic process sphingolipid catabolic process carboxylic acid metabolic process seed maturation sucrose metabolic process Sphingolipid metabolism Sulfur metabolism sucrose synthase activity carboxy-lyase activity triacylglycerol degradation single-organism metabolic process Plant-pathogen interaction lipid metabolic process Starch and sucrose metabolism | details |
| TreatCFM001011 | PRPP biosynthesis I Transcription_related, Transcription factor: E2F-DP TGF-beta signaling pathway regulation of protein phosphatase type 2A activity nucleotide biosynthetic process nucleoside metabolic process Cell cycle ribose phosphate diphosphokinase activity RNA polymerase II transcription factor activity, sequence-specific DNA binding protein phosphatase type 2A regulator activity protein phosphatase type 2A complex transcription factor complex regulation of transcription from RNA polymerase II promoter RNA secondary structure unwinding mRNA surveillance pathway | details |
| TreatCFM001152 | saccharopine dehydrogenase (NADP+, L-lysine-forming) activity UDP-glycosyltransferase activity 3-hydroxyacyl-CoA dehydrogenase activity Valine, leucine and isoleucine degradation L-lysine catabolic process leucine catabolic process Lysine degradation cobalt ion binding fatty acid metabolic process crocetin esters biosynthesis L-leucine degradation I unsaturated, even numbered fatty acid β-oxidation fatty acid β-oxidation II (peroxisome) Fatty acid metabolism transferase activity, transferring hexosyl groups triacylglycerol degradation very long chain fatty acid biosynthesis II formation of glycosidic bonds, GlycosylTransferases: GTnc lipid metabolic process flavonoid biosynthetic process flavonoid glucuronidation oxidation-reduction process | details |
| TreatCFM001153 | 3-hydroxyacyl-CoA dehydrogenase activity unsaturated, even numbered fatty acid β-oxidation fatty acid β-oxidation II (peroxisome) fatty acid metabolic process Fatty acid metabolism very long chain fatty acid biosynthesis II Valine, leucine and isoleucine degradation innate immune response protein monoubiquitination histone ubiquitination cytidine to uridine editing leucine catabolic process L-leucine degradation I reproductive structure development SCF-dependent proteasomal ubiquitin-dependent protein catabolic process post-embryonic development jasmonic acid biosynthesis cobalt ion binding SCF ubiquitin ligase complex | details |
| TreatCFM001558 | histamine N-methyltransferase activity protein kinase regulator activity 3-hydroxyacyl-CoA dehydrogenase activity protein histidine kinase binding adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 cellular response to glucose starvation cellular response to cold regulation of chlorophyll catabolic process secondary growth cellular response to sucrose stimulus negative regulation of iron ion transport cellular response to abscisic acid stimulus regulation of meristem development phosphorelay sensor kinase activity Transcription_related, Transcription factor: Orphans leaf senescence regulation of protein kinase activity regulation of seed germination fatty acid β-oxidation II (peroxisome) unsaturated, even numbered fatty acid β-oxidation phloem or xylem histogenesis response to osmotic stress cellular response to phosphate starvation peptidyl-histidine phosphorylation regulation of flower development fatty acid metabolic process very long chain fatty acid biosynthesis II signal transduction by protein phosphorylation phosphorelay signal transduction system defense response to bacterium protein autophosphorylation intracellular | details |
| TreatCFM001713 | RNA binding metal ion binding nucleotidyltransferase activity RNA processing vesicle-mediated transport cell part formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM001910 | linoleate biosynthesis I (plants) protein kinase regulator activity oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water Ubiquitin_Proteasome_system, E3 adaptor: BTB Fatty acid metabolism regulation of protein kinase activity response to red light Cul3-RING ubiquitin ligase complex membrane part | details |
Expression profiles
 Show details about module gene expression profiling |