TreatCFM001910's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| linoleate biosynthesis I (plants) | 0.000709167 | plantCyc |
| protein kinase regulator activity | 0.008093936 | GO:0019887 |
| oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 0.008093936 | GO:0016717 |
| Ubiquitin_Proteasome_system, E3 adaptor: BTB | 0.010241984 | ubs family |
| Fatty acid metabolism | 0.010593591 | KEGG pathway |
| regulation of protein kinase activity | 0.011723524 | GO:0045859 |
| response to red light | 0.011723524 | GO:0010114 |
| Cul3-RING ubiquitin ligase complex | 0.023447049 | GO:0031463 |
| membrane part | 0.044207138 | GO:0044425 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004480 | AT3G12120 (0) | FAD2|fatty acid desaturase 2 |
| CRO_T008993 | AT1G64810 (1.00E-75) | APO1|ACCUMULATION OF PHOTOSYSTEM ONE 1 |
| CRO_T023305 | AT1G69800 (5.00E-63) | Cystathionine beta-synthase (CBS) protein |
| CRO_T024619 | AT3G54120 (3.00E-38) | Reticulon family protein |
| CRO_T027839 | AT2G46260 (0) | LRB1|light-response BTB 1 |
| CRO_T030737 | AT2G40980 (2.00E-29) | Protein kinase superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000227 | ErbB signaling pathway Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase metabolic process Fatty acid metabolism | details |
| TreatCFM000228 | PRPP biosynthesis I nucleoside metabolic process nucleotide biosynthetic process ribose phosphate diphosphokinase activity Ubiquitin_Proteasome_system, E3 adaptor: F-box plasma membrane | details |
| TreatCFM000303 | glyoxysome beta-Alanine metabolism pantoate-beta-alanine ligase activity malate synthase activity phosphopantothenate biosynthesis I Protein_kinases_phosphatases, PPC:2.1.4: GmPK6/AtMRK1 Family pantothenate biosynthetic process glyoxylate cycle tricarboxylic acid cycle | details |
| TreatCFM000618 | dUDP biosynthetic process dTDP biosynthetic process dTTP biosynthetic process thymidylate kinase activity ethanolamine-phosphate cytidylyltransferase activity | details |
| TreatCFM000649 | malate synthase activity glyoxysome Protein_kinases_phosphatases, PPC:1.6.4: RKF3 Like Kinase 3-hydroxyacyl-CoA dehydrogenase activity Protein_kinases_phosphatases, PPC:3.1.1: Casein Kinase I Family glyoxylate cycle unsaturated, even numbered fatty acid β-oxidation fatty acid β-oxidation II (peroxisome) fatty acid metabolic process Wnt signaling pathway protein serine/threonine kinase activity regulation of cell shape Endocytosis tricarboxylic acid cycle very long chain fatty acid biosynthesis II Fatty acid metabolism | details |
| TreatCFM000797 | linoleate biosynthesis I (plants) Protein_kinases_phosphatases, PPC:1.3.3: Leucine Rich Repeat Receptor Kinase I & Unknown Receptor Kinase I glycerone kinase activity condensed chromosome outer kinetochore oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase spindle microtubule glycerol metabolic process ATP binding chromosome segregation Fatty acid metabolism NF-kappa B signaling pathway cytosol microtubule binding | details |
| TreatCFM000917 | beta-Alanine metabolism pantothenate biosynthetic process inositol trisphosphate metabolic process inositol-1,3,4-trisphosphate 6-kinase activity inositol-1,3,4-trisphosphate 5-kinase activity inositol tetrakisphosphate 1-kinase activity pantoate-beta-alanine ligase activity Inositol phosphate metabolism anthocyanin biosynthesis anthocyanin biosynthesis (pelargonidin 3-O-glucoside) lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3) phosphopantothenate biosynthesis I proanthocyanidins biosynthesis from flavanols ethylene biosynthesis I (plants) leucodelphinidin biosynthesis pinobanksin biosynthesis 1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza) Flavonoid biosynthesis flavonoid biosynthesis (in equisetum) | details |
| TreatCFM001002 | sulfite oxidation IV ceramide degradation Protein_kinases_phosphatases, PPC:1.2.1: Receptor Like Cytoplasmic Kinase VIII formation of glycosidic bonds, GlycosylTransferases: GTnc starch metabolic process sphingolipid catabolic process carboxylic acid metabolic process seed maturation sucrose metabolic process Sphingolipid metabolism Sulfur metabolism sucrose synthase activity carboxy-lyase activity triacylglycerol degradation single-organism metabolic process Plant-pathogen interaction lipid metabolic process Starch and sucrose metabolism | details |
| TreatCFM001472 | Transcription_related, Transcription factor: DBP flavin biosynthesis I (bacteria and plants) endoplasmic reticulum actin cytoskeleton actin filament depolymerization Transcription_related, Transcription factor: HB Regulation of actin cytoskeleton cell membrane part | details |
| TreatCFM001703 | Transcription_related, Transcription factor: Whirly defense response to fungus transcription from RNA polymerase II promoter positive regulation of transcription from RNA polymerase II promoter formation of glycosidic bonds, GlycosylTransferases: GTnc positive regulation of transcription, DNA-templated core promoter sequence-specific DNA binding transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | details |
| TreatCFM001713 | RNA binding metal ion binding nucleotidyltransferase activity RNA processing vesicle-mediated transport cell part formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM001754 | glycerol-3-phosphate O-acyltransferase activity methionine adenosyltransferase activity GDP-mannose transmembrane transporter activity maintenance of root meristem identity GDP-mannose transmembrane transport S-adenosylmethionine biosynthetic process endoplasmic reticulum DNA replication factor A complex CDP-diacylglycerol biosynthesis I diacylglycerol and triacylglycerol biosynthesis Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family one-carbon metabolic process Prp19 complex Cul4-RING E3 ubiquitin ligase complex carbohydrate transport precatalytic spliceosome membrane part catalytic step 2 spliceosome cytosol mRNA splicing, via spliceosome | details |
| TreatCFM001949 | cilium morphogenesis intraciliary retrograde transport linoleate biosynthesis I (plants) intraciliary transport particle A glycyl-tRNA aminoacylation protein localization to cilium regulation of protein kinase activity glycine-tRNA ligase activity protein kinase regulator activity oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water glyoxylate cycle cilium plant sterol biosynthesis Aminoacyl-tRNA biosynthesis Fatty acid metabolism Steroid biosynthesis lipid metabolic process | details |
Expression profiles
 Show details about module gene expression profiling |