TreatCFM000660's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| glutaminyl-tRNAgln biosynthesis via transamidation | 0.001594896 | plantCyc |
| DNA unwinding involved in DNA replication | 0.010628933 | GO:0006268 |
| DNA topological change | 0.010628933 | GO:0006265 |
| chromosome segregation | 0.010628933 | GO:0007059 |
| glutaminyl-tRNAGln biosynthesis via transamidation | 0.010628933 | GO:0070681 |
| mitotic sister chromatid cohesion | 0.010628933 | GO:0007064 |
| vacuolar acidification | 0.010628933 | GO:0007035 |
| mitochondrial translation | 0.010628933 | GO:0032543 |
| Transcription_related, Transcription factor: C3H | 0.013484725 | TF family |
| cohesin core heterodimer | 0.019228994 | GO:0008280 |
| glutamyl-tRNA(Gln) amidotransferase complex | 0.019228994 | GO:0030956 |
| DNA topoisomerase complex (ATP-hydrolyzing) | 0.019228994 | GO:0009330 |
| nucleoid | 0.019228994 | GO:0009295 |
| vacuolar proton-transporting V-type ATPase, V0 domain | 0.019773719 | GO:0000220 |
| myosin complex | 0.025617454 | GO:0016459 |
| ATP hydrolysis coupled proton transport | 0.027828506 | GO:0015991 |
| DNA topoisomerase type II (ATP-hydrolyzing) activity | 0.031135303 | GO:0003918 |
| glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 0.031135303 | GO:0050567 |
| cell part | 0.031935112 | GO:0044464 |
| mitochondrion | 0.031935112 | GO:0005739 |
| mediator complex | 0.031935112 | GO:0016592 |
| chromosome | 0.031935112 | GO:0005694 |
| chloroplast | 0.035793401 | GO:0009507 |
| motor activity | 0.036298769 | GO:0003774 |
| Aminoacyl-tRNA biosynthesis | 0.046464138 | KEGG pathway |
| Cell cycle | 0.046464138 | KEGG pathway |
| DNA repair | 0.048539508 | GO:0006281 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005279 | AT1G67170 (7.00E-41) | unknown protein |
| CRO_T005714 | AT1G76950 (5.00E-27) | PRAF1|Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain |
| CRO_T014827 | AT3G10690 (3.00E-04) | GYRA|DNA GYRASE A |
| CRO_T017761 | AT1G48520 (1.00E-79) | GATB|GLU-ADT subunit B |
| CRO_T020505 | AT5G55940 (9.00E-61) | emb2731|embryo defective 2731 |
| CRO_T027186 | AT2G25610 (0.00000001) | ATPase, F0/V0 complex, subunit C protein |
| CRO_T028532 | AT5G23110 (6.00E-20) | Zinc finger, C3HC4 type (RING finger) family protein |
| CRO_T029152 | AT2G27170 (8.00E-105) | SMC3|STRUCTURAL MAINTENANCE OF CHROMOSOMES 3; TTN7|TITAN7 |
| CRO_T032500 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001660 | glutaminyl-tRNAgln biosynthesis via transamidation glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity protein domain specific binding glutaminyl-tRNAGln biosynthesis via transamidation regulation of translation mitochondrial translation MAPK signaling pathway - yeast response to cold glutamyl-tRNA(Gln) amidotransferase complex response to heat pollen tube mitochondrion Aminoacyl-tRNA biosynthesis | details |
| TreatCFM001980 | TCA cycle II (plants and fungi) negative regulation of chlorophyll biosynthetic process chloroplast-nucleus signaling pathway red or far-red light signaling pathway MAPK signaling pathway tetrapyrrole binding Transcription_related, Transcription factor: RWP-RK vesicle docking Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII Transcription_related, Transcription factor: C3H vesicle fusion nuclear envelope integral component of endoplasmic reticulum membrane SNARE complex | details |
| TreatCFM001993 | glutaminyl-tRNAgln biosynthesis via transamidation mitochondrial RNA metabolic process glutaminyl-tRNAGln biosynthesis via transamidation glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity Transcription_related, Transcription regulator: SNF2 protein homooligomerization mitochondrial translation glutamyl-tRNA(Gln) amidotransferase complex alkaloid metabolic process RNA modification protein domain specific binding MAPK signaling pathway - yeast Aminoacyl-tRNA biosynthesis Homologous recombination small GTPase mediated signal transduction | details |
| TreatCFM002138 | glutaminyl-tRNAgln biosynthesis via transamidation lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3) queuine tRNA-ribosyltransferase activity inositol-1,3,4-trisphosphate 6-kinase activity glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity inositol tetrakisphosphate 1-kinase activity inositol-1,3,4-trisphosphate 5-kinase activity inositol trisphosphate metabolic process glutaminyl-tRNAGln biosynthesis via transamidation queuosine biosynthetic process glutamyl-tRNA(Gln) amidotransferase complex mitochondrial translation 1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza) glucan endo-1,3-beta-D-glucosidase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Aminoacyl-tRNA biosynthesis Inositol phosphate metabolism RNA secondary structure unwinding Starch and sucrose metabolism cell redox homeostasis | details |
| TreatCFM002144 | glutaminyl-tRNAgln biosynthesis via transamidation ATG1/ULK1 kinase complex heterotrimeric G-protein complex glutamyl-tRNA(Gln) amidotransferase complex lateral root development glutaminyl-tRNAGln biosynthesis via transamidation response to extracellular stimulus regulation of root development organ morphogenesis reactive oxygen species metabolic process glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity endoplasmic reticulum unfolded protein response fruit development defense response to fungus, incompatible interaction mitochondrial translation negative regulation of abscisic acid-activated signaling pathway Cul4-RING E3 ubiquitin ligase complex autophagy histone acetylation Transcription_related, Transcription regulator: mTERF Autophagy - animal Ras signaling pathway histone acetyltransferase activity jasmonic acid mediated signaling pathway response to ethylene exocyst exocytosis Aminoacyl-tRNA biosynthesis RNA degradation helicase activity | details |
Expression profiles
 Show details about module gene expression profiling |