TreatCFM002138's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| glutaminyl-tRNAgln biosynthesis via transamidation | 0.005847174 | plantCyc |
| lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3) | 0.005847174 | plantCyc |
| queuine tRNA-ribosyltransferase activity | 0.005888961 | GO:0008479 |
| inositol-1,3,4-trisphosphate 6-kinase activity | 0.005888961 | GO:0052725 |
| glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 0.005888961 | GO:0050567 |
| inositol tetrakisphosphate 1-kinase activity | 0.005888961 | GO:0047325 |
| inositol-1,3,4-trisphosphate 5-kinase activity | 0.005888961 | GO:0052726 |
| inositol trisphosphate metabolic process | 0.006424245 | GO:0032957 |
| glutaminyl-tRNAGln biosynthesis via transamidation | 0.006424245 | GO:0070681 |
| queuosine biosynthetic process | 0.006424245 | GO:0008616 |
| glutamyl-tRNA(Gln) amidotransferase complex | 0.008096328 | GO:0030956 |
| mitochondrial translation | 0.009632807 | GO:0032543 |
| 1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza) | 0.010056006 | plantCyc |
| glucan endo-1,3-beta-D-glucosidase activity | 0.013731775 | GO:0042973 |
| adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | 0.026230762 | cazy family |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.026230762 | cazy family |
| Aminoacyl-tRNA biosynthesis | 0.031065353 | KEGG pathway |
| Inositol phosphate metabolism | 0.031065353 | KEGG pathway |
| RNA secondary structure unwinding | 0.031523324 | GO:0010501 |
| Starch and sucrose metabolism | 0.042500872 | KEGG pathway |
| cell redox homeostasis | 0.048568828 | GO:0045454 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003324 | AT1G12770 (1.00E-37) | EMB1586|embryo defective 1586; ISE1|INCREASED SIZE EXCLUSION LIMIT 1 |
| CRO_T007774 | AT5G02860 (0) | Pentatricopeptide repeat (PPR) superfamily protein |
| CRO_T012874 | AT4G33770 (1.00E-55) | ITPK2|inositol 1,3,4-trisphosphate 5/6 kinase 2 |
| CRO_T017761 | AT1G48520 (1.00E-79) | GATB|GLU-ADT subunit B |
| CRO_T022397 | AT3G50960 (4.00E-77) | PLP3a|phosducin-like protein 3 homolog |
| CRO_T031860 | AT1G11820 (7.00E-170) | O-Glycosyl hydrolases family 17 protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000660 | glutaminyl-tRNAgln biosynthesis via transamidation DNA unwinding involved in DNA replication DNA topological change chromosome segregation glutaminyl-tRNAGln biosynthesis via transamidation mitotic sister chromatid cohesion vacuolar acidification mitochondrial translation Transcription_related, Transcription factor: C3H cohesin core heterodimer glutamyl-tRNA(Gln) amidotransferase complex DNA topoisomerase complex (ATP-hydrolyzing) nucleoid vacuolar proton-transporting V-type ATPase, V0 domain myosin complex ATP hydrolysis coupled proton transport DNA topoisomerase type II (ATP-hydrolyzing) activity glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity cell part mitochondrion mediator complex chromosome chloroplast motor activity Aminoacyl-tRNA biosynthesis Cell cycle DNA repair | details |
| TreatCFM001155 | regulation of root development response to extracellular stimulus lateral root development organ morphogenesis fruit development defense response to fungus, incompatible interaction reactive oxygen species metabolic process endoplasmic reticulum unfolded protein response heterotrimeric G-protein complex Cul4-RING E3 ubiquitin ligase complex negative regulation of abscisic acid-activated signaling pathway histone acetylation histone acetyltransferase activity glucan endo-1,3-beta-D-glucosidase activity oxidized purine nucleobase lesion DNA N-glycosylase activity Ras signaling pathway jasmonic acid mediated signaling pathway damaged DNA binding response to ethylene adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription regulator: mTERF cytosolic small ribosomal subunit DNA repair small GTPase mediated signal transduction | details |
| TreatCFM001176 | inositol-1,3,4-trisphosphate 5-kinase activity inositol tetrakisphosphate 1-kinase activity tryptophan-tRNA ligase activity iron ion transmembrane transporter activity inositol-1,3,4-trisphosphate 6-kinase activity inositol trisphosphate metabolic process tryptophanyl-tRNA aminoacylation cellular iron ion homeostasis iron ion transmembrane transport plant ovule development acyl-CoA hydrolysis lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3) Aminoacyl-tRNA biosynthesis Inositol phosphate metabolism 1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza) cutin biosynthesis sporopollenin precursors biosynthesis suberin monomers biosynthesis | details |
| TreatCFM001640 | trans-Golgi network outer membrane-bounded periplasmic space Calcium signaling pathway MAPK signaling pathway early endosome manganese ion homeostasis manganese-transporting ATPase activity manganese ion transmembrane transport cell plate assembly cytochrome complex assembly calcium ion transmembrane transport ATP binding calcium-transporting ATPase activity RNA secondary structure unwinding root development translational initiation | details |
| TreatCFM001660 | glutaminyl-tRNAgln biosynthesis via transamidation glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity protein domain specific binding glutaminyl-tRNAGln biosynthesis via transamidation regulation of translation mitochondrial translation MAPK signaling pathway - yeast response to cold glutamyl-tRNA(Gln) amidotransferase complex response to heat pollen tube mitochondrion Aminoacyl-tRNA biosynthesis | details |
| TreatCFM001961 | exon-exon junction complex adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc RNA splicing protein processing oxidized purine nucleobase lesion DNA N-glycosylase activity glucan endo-1,3-beta-D-glucosidase activity cytosolic small ribosomal subunit damaged DNA binding | details |
| TreatCFM001993 | glutaminyl-tRNAgln biosynthesis via transamidation mitochondrial RNA metabolic process glutaminyl-tRNAGln biosynthesis via transamidation glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity Transcription_related, Transcription regulator: SNF2 protein homooligomerization mitochondrial translation glutamyl-tRNA(Gln) amidotransferase complex alkaloid metabolic process RNA modification protein domain specific binding MAPK signaling pathway - yeast Aminoacyl-tRNA biosynthesis Homologous recombination small GTPase mediated signal transduction | details |
| TreatCFM002055 | cellulose biosynthesis xyloglucan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc organic cyclic compound metabolic process small molecule metabolic process heterocycle metabolic process queuosine biosynthetic process vitamin E biosynthesis (tocopherols) Ubiquinone and other terpenoid-quinone biosynthesis cellular lipid metabolic process tocopherol cyclase activity queuine tRNA-ribosyltransferase activity response to heat heat shock protein binding Transcription_related, Transcription factor: bHLH cell redox homeostasis | details |
| TreatCFM002066 | 3-dehydroquinate biosynthesis I queuine tRNA-ribosyltransferase activity 3-deoxy-7-phosphoheptulonate synthase activity queuosine biosynthetic process aromatic amino acid family biosynthetic process glucan endo-1,3-beta-D-glucosidase activity cellulase activity cellulose catabolic process adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc lyase activity Biosynthesis of amino acids Starch and sucrose metabolism cell redox homeostasis | details |
| TreatCFM002144 | glutaminyl-tRNAgln biosynthesis via transamidation ATG1/ULK1 kinase complex heterotrimeric G-protein complex glutamyl-tRNA(Gln) amidotransferase complex lateral root development glutaminyl-tRNAGln biosynthesis via transamidation response to extracellular stimulus regulation of root development organ morphogenesis reactive oxygen species metabolic process glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity endoplasmic reticulum unfolded protein response fruit development defense response to fungus, incompatible interaction mitochondrial translation negative regulation of abscisic acid-activated signaling pathway Cul4-RING E3 ubiquitin ligase complex autophagy histone acetylation Transcription_related, Transcription regulator: mTERF Autophagy - animal Ras signaling pathway histone acetyltransferase activity jasmonic acid mediated signaling pathway response to ethylene exocyst exocytosis Aminoacyl-tRNA biosynthesis RNA degradation helicase activity | details |
Expression profiles
 Show details about module gene expression profiling |