TreatCFM001660's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| glutaminyl-tRNAgln biosynthesis via transamidation | 0.001063594 | plantCyc |
| glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 0.002127502 | GO:0050567 |
| protein domain specific binding | 0.003454893 | GO:0019904 |
| glutaminyl-tRNAGln biosynthesis via transamidation | 0.005059831 | GO:0070681 |
| regulation of translation | 0.005059831 | GO:0006417 |
| mitochondrial translation | 0.00674395 | GO:0032543 |
| MAPK signaling pathway - yeast | 0.007971652 | KEGG pathway |
| response to cold | 0.009098952 | GO:0009409 |
| glutamyl-tRNA(Gln) amidotransferase complex | 0.010424761 | GO:0030956 |
| response to heat | 0.011314777 | GO:0009408 |
| pollen tube | 0.01625798 | GO:0090406 |
| mitochondrion | 0.01625798 | GO:0005739 |
| Aminoacyl-tRNA biosynthesis | 0.016944738 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001518 | AT1G58250 (0) | HPS4|hypersensitive to Pi starvation 4; SAB|SABRE |
| CRO_T005550 | AT2G04750 (0) | Actin binding Calponin homology (CH) domain-containing protein |
| CRO_T017761 | AT1G48520 (1.00E-79) | GATB|GLU-ADT subunit B |
| CRO_T020505 | AT5G55940 (9.00E-61) | emb2731|embryo defective 2731 |
| CRO_T023881 | AT1G21760 (2.00E-52) | ATFBP7|F-BOX PROTEIN 7 |
| CRO_T030976 | AT1G78220 (3.00E-55) | GF14 PI|GF 14 PI CHAIN; GRF13|general regulatory factor 13 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000660 | glutaminyl-tRNAgln biosynthesis via transamidation DNA unwinding involved in DNA replication DNA topological change chromosome segregation glutaminyl-tRNAGln biosynthesis via transamidation mitotic sister chromatid cohesion vacuolar acidification mitochondrial translation Transcription_related, Transcription factor: C3H cohesin core heterodimer glutamyl-tRNA(Gln) amidotransferase complex DNA topoisomerase complex (ATP-hydrolyzing) nucleoid vacuolar proton-transporting V-type ATPase, V0 domain myosin complex ATP hydrolysis coupled proton transport DNA topoisomerase type II (ATP-hydrolyzing) activity glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity cell part mitochondrion mediator complex chromosome chloroplast motor activity Aminoacyl-tRNA biosynthesis Cell cycle DNA repair | details |
| TreatCFM000689 | S-adenosyl-L-methionine cycle II 2'-deoxymugineic acid phytosiderophore biosynthesis baicalein degradation (hydrogen peroxide detoxification) L-methionine degradation I (to L-homocysteine) L-methionine salvage cycle I (bacteria and plants) L-methionine salvage cycle II (plants) S-adenosyl-L-methionine biosynthesis wogonin metabolism | details |
| TreatCFM001101 | mitochondrial RNA metabolic process Transcription_related, Transcription regulator: SNF2 RNA modification large ribosomal subunit rRNA binding protein domain specific binding MAPK signaling pathway - yeast Homologous recombination mitochondrial large ribosomal subunit | details |
| TreatCFM001993 | glutaminyl-tRNAgln biosynthesis via transamidation mitochondrial RNA metabolic process glutaminyl-tRNAGln biosynthesis via transamidation glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity Transcription_related, Transcription regulator: SNF2 protein homooligomerization mitochondrial translation glutamyl-tRNA(Gln) amidotransferase complex alkaloid metabolic process RNA modification protein domain specific binding MAPK signaling pathway - yeast Aminoacyl-tRNA biosynthesis Homologous recombination small GTPase mediated signal transduction | details |
| TreatCFM002138 | glutaminyl-tRNAgln biosynthesis via transamidation lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3) queuine tRNA-ribosyltransferase activity inositol-1,3,4-trisphosphate 6-kinase activity glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity inositol tetrakisphosphate 1-kinase activity inositol-1,3,4-trisphosphate 5-kinase activity inositol trisphosphate metabolic process glutaminyl-tRNAGln biosynthesis via transamidation queuosine biosynthetic process glutamyl-tRNA(Gln) amidotransferase complex mitochondrial translation 1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza) glucan endo-1,3-beta-D-glucosidase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Aminoacyl-tRNA biosynthesis Inositol phosphate metabolism RNA secondary structure unwinding Starch and sucrose metabolism cell redox homeostasis | details |
| TreatCFM002144 | glutaminyl-tRNAgln biosynthesis via transamidation ATG1/ULK1 kinase complex heterotrimeric G-protein complex glutamyl-tRNA(Gln) amidotransferase complex lateral root development glutaminyl-tRNAGln biosynthesis via transamidation response to extracellular stimulus regulation of root development organ morphogenesis reactive oxygen species metabolic process glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity endoplasmic reticulum unfolded protein response fruit development defense response to fungus, incompatible interaction mitochondrial translation negative regulation of abscisic acid-activated signaling pathway Cul4-RING E3 ubiquitin ligase complex autophagy histone acetylation Transcription_related, Transcription regulator: mTERF Autophagy - animal Ras signaling pathway histone acetyltransferase activity jasmonic acid mediated signaling pathway response to ethylene exocyst exocytosis Aminoacyl-tRNA biosynthesis RNA degradation helicase activity | details |
Expression profiles
 Show details about module gene expression profiling |