TreatCFM000719's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| trans-octaprenyltranstransferase activity | 0.002145549 | GO:0050347 |
| all-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate specific) activity | 0.002145549 | GO:0052923 |
| dihydroneopterin aldolase activity | 0.002145549 | GO:0004150 |
| heptaprenyl diphosphate synthase activity | 0.003217847 | GO:0036422 |
| heptaprenyl diphosphate biosynthesis | 0.003301288 | plantCyc |
| hexaprenyl diphosphate biosynthesis | 0.003301288 | plantCyc |
| nonaprenyl diphosphate biosynthesis I | 0.003301288 | plantCyc |
| nonaprenyl diphosphate biosynthesis II | 0.003301288 | plantCyc |
| octaprenyl diphosphate biosynthesis | 0.003301288 | plantCyc |
| superpathway of plastoquinol biosynthesis | 0.003301288 | plantCyc |
| 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I | 0.004715429 | plantCyc |
| folic acid biosynthetic process | 0.006436646 | GO:0046656 |
| aminopeptidase activity | 0.00771827 | GO:0004177 |
| tetrahydrofolate biosynthetic process | 0.008044024 | GO:0046654 |
| polyisoprenoid biosynthesis | 0.008248952 | plantCyc |
| geranylgeranyl diphosphate biosynthesis | 0.008396451 | plantCyc |
| superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) | 0.008396451 | plantCyc |
| superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) | 0.008396451 | plantCyc |
| Folate biosynthesis | 0.008502467 | KEGG pathway |
| tetrahydrofolate biosynthesis II | 0.01208774 | plantCyc |
| chloroplast thylakoid lumen | 0.012137316 | GO:0009543 |
| 90S preribosome | 0.012137316 | GO:0030686 |
| Terpenoid backbone biosynthesis | 0.01377981 | KEGG pathway |
| manganese ion binding | 0.014455725 | GO:0030145 |
| isoprenoid biosynthetic process | 0.020357124 | GO:0008299 |
| maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.026490418 | GO:0000462 |
| small-subunit processome | 0.038976441 | GO:0032040 |
| methyltransferase activity | 0.044284868 | GO:0008168 |
| Photosynthesis | 0.048015188 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004169 | AT1G23465 (2.00E-42) | Peptidase S24/S26A/S26B/S26C family protein |
| CRO_T004682 | AT2G23670 (1.00E-11) | YCF37|homolog of Synechocystis YCF37 |
| CRO_T012632 | AT1G09300 (0) | Metallopeptidase M24 family protein |
| CRO_T023935 | AT3G11750 (3.00E-41) | FOLB1|Dihydroneopterin aldolase |
| CRO_T024209 | AT4G30990 (0) | ARM repeat superfamily protein |
| CRO_T032936 | AT5G04610 (2.00E-19) | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000020 | redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 | details |
| TreatCFM000037 | Transcription_related, Transcription factor: LOB mitochondrial transport 90S preribosome mitochondrial membrane translational elongation maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) small-subunit processome | details |
| TreatCFM000487 | Protein_kinases_phosphatases, PPC:1.16.1: Receptor Like Cytoplasmic Kinase II xylan biosynthetic process translational elongation maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Transcription_related, Transcription factor: MYB 90S preribosome Plant hormone signal transduction | details |
| TreatCFM000494 | heptaprenyl diphosphate biosynthesis hexaprenyl diphosphate biosynthesis nonaprenyl diphosphate biosynthesis I nonaprenyl diphosphate biosynthesis II octaprenyl diphosphate biosynthesis superpathway of plastoquinol biosynthesis Transcription_related, Transcription factor: BES1 trans-octaprenyltranstransferase activity all-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate specific) activity geranylgeranyl diphosphate biosynthesis polyisoprenoid biosynthesis superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) heptaprenyl diphosphate synthase activity 3'-5'-exoribonuclease activity N-acetyltransferase activity hydrolase activity | details |
| TreatCFM000756 | putrescine biosynthesis II putrescine biosynthetic process response to pH protein-arginine deiminase activity agmatine deiminase activity hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 Wnt signaling pathway Arginine and proline metabolism aminopeptidase activity Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) Transcription_related, Transcription factor: Orphans manganese ion binding intracellular | details |
| TreatCFM001304 | Cytochrome_P450, Cytochrome P450: CYP94D dihydroneopterin aldolase activity hydroxymethyl-, formyl- and related transferase activity cyanoalanine nitrilase activity formyltetrahydrofolate deformylase activity 3-cyanoalanine hydratase activity folic acid biosynthetic process cyanide catabolic process detoxification of nitrogen compound Glyoxylate and dicarboxylate metabolism tetrahydrofolate biosynthetic process 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I cyanide detoxification I L-asparagine degradation I Cyanoamino acid metabolism Folate biosynthesis 'de novo' IMP biosynthetic process aromatase activity superpathway of aspartate and asparagine biosynthesis tetrahydrofolate biosynthesis II snoRNA binding rRNA processing amino acid binding | details |
| TreatCFM001622 | cytoplasmic ribonucleoprotein granule hydroxymethyl-, formyl- and related transferase activity all-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate specific) activity trans-octaprenyltranstransferase activity formyltetrahydrofolate deformylase activity dihydroneopterin aldolase activity Glyoxylate and dicarboxylate metabolism heptaprenyl diphosphate biosynthesis hexaprenyl diphosphate biosynthesis nonaprenyl diphosphate biosynthesis I nonaprenyl diphosphate biosynthesis II octaprenyl diphosphate biosynthesis superpathway of plastoquinol biosynthesis heptaprenyl diphosphate synthase activity 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I Folate biosynthesis polyisoprenoid biosynthesis geranylgeranyl diphosphate biosynthesis superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) folic acid biosynthetic process tetrahydrofolate biosynthesis II chromosome segregation tetrahydrofolate biosynthetic process 'de novo' IMP biosynthetic process small-subunit processome snoRNA binding regulation of gene expression isoprenoid biosynthetic process Terpenoid backbone biosynthesis rRNA processing RNA secondary structure unwinding translational initiation amino acid binding Ubiquitin_Proteasome_system, E3 adaptor: DWD Photosynthesis ATP-dependent RNA helicase activity | details |
Expression profiles
 Show details about module gene expression profiling |