TreatCFM000756's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| putrescine biosynthesis II | 0.001240731 | plantCyc |
| putrescine biosynthetic process | 0.002361673 | GO:0009446 |
| response to pH | 0.002361673 | GO:0009268 |
| protein-arginine deiminase activity | 0.003754544 | GO:0004668 |
| agmatine deiminase activity | 0.003754544 | GO:0047632 |
| hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 | 0.005687189 | cazy family |
| Wnt signaling pathway | 0.006201457 | KEGG pathway |
| Arginine and proline metabolism | 0.009285706 | KEGG pathway |
| aminopeptidase activity | 0.015004864 | GO:0004177 |
| Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) | 0.017001175 | kinase family |
| Transcription_related, Transcription factor: Orphans | 0.017001175 | TF family |
| manganese ion binding | 0.025287059 | GO:0030145 |
| intracellular | 0.04523602 | GO:0005622 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003500 | AT1G07050 (9.00E-10) | CCT motif family protein |
| CRO_T004255 | AT3G05240 (2.00E-83) | MEF19|mitochondrial editing factor 19 |
| CRO_T008477 | AT5G08170 (4.00E-147) | ATAIH|AGMATINE IMINOHYDROLASE; EMB1873|EMBRYO DEFECTIVE 1873 |
| CRO_T012632 | AT1G09300 (0) | Metallopeptidase M24 family protein |
| CRO_T015763 | AT5G46230 (7.00E-47) | Protein of unknown function, DUF538 |
| CRO_T026931 | AT4G19420 (7.00E-167) | Pectinacetylesterase family protein |
| CRO_T028258 | AT2G30360 (4.00E-145) | CIPK11|CBL-INTERACTING PROTEIN KINASE 11; PKS5|PROTEIN KINASE SOS2-LIKE 5; SIP4|SOS3-interacting protein 4; SNRK3.22|SNF1-RELATED PROTEIN KINASE 3.22 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000494 | heptaprenyl diphosphate biosynthesis hexaprenyl diphosphate biosynthesis nonaprenyl diphosphate biosynthesis I nonaprenyl diphosphate biosynthesis II octaprenyl diphosphate biosynthesis superpathway of plastoquinol biosynthesis Transcription_related, Transcription factor: BES1 trans-octaprenyltranstransferase activity all-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate specific) activity geranylgeranyl diphosphate biosynthesis polyisoprenoid biosynthesis superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) heptaprenyl diphosphate synthase activity 3'-5'-exoribonuclease activity N-acetyltransferase activity hydrolase activity | details |
| TreatCFM000719 | trans-octaprenyltranstransferase activity all-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate specific) activity dihydroneopterin aldolase activity heptaprenyl diphosphate synthase activity heptaprenyl diphosphate biosynthesis hexaprenyl diphosphate biosynthesis nonaprenyl diphosphate biosynthesis I nonaprenyl diphosphate biosynthesis II octaprenyl diphosphate biosynthesis superpathway of plastoquinol biosynthesis 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I folic acid biosynthetic process aminopeptidase activity tetrahydrofolate biosynthetic process polyisoprenoid biosynthesis geranylgeranyl diphosphate biosynthesis superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) Folate biosynthesis tetrahydrofolate biosynthesis II chloroplast thylakoid lumen 90S preribosome Terpenoid backbone biosynthesis manganese ion binding isoprenoid biosynthetic process maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) small-subunit processome methyltransferase activity Photosynthesis | details |
| TreatCFM001159 | 5-aminoimidazole ribonucleotide biosynthesis I cytoplasmic ribonucleoprotein granule phosphoribosylformylglycinamidine cyclo-ligase activity AMPK signaling pathway protein secretion malate transmembrane transport chromosome segregation vesicle docking involved in exocytosis 'de novo' IMP biosynthetic process regulation of gene expression | details |
| TreatCFM001470 | putrescine biosynthesis II putrescine biosynthetic process hydroxymethyl-, formyl- and related transferase activity agmatine deiminase activity protein-arginine deiminase activity formyltetrahydrofolate deformylase activity Glyoxylate and dicarboxylate metabolism 'de novo' IMP biosynthetic process structural constituent of ribosome Cul3-RING ubiquitin ligase complex mitochondrial small ribosomal subunit Arginine and proline metabolism large ribosomal subunit amino acid binding | details |
Expression profiles
 Show details about module gene expression profiling |