TreatCFM001622's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| cytoplasmic ribonucleoprotein granule | 0.001241171 | GO:0036464 |
| hydroxymethyl-, formyl- and related transferase activity | 0.002748669 | GO:0016742 |
| all-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate specific) activity | 0.002748669 | GO:0052923 |
| trans-octaprenyltranstransferase activity | 0.002748669 | GO:0050347 |
| formyltetrahydrofolate deformylase activity | 0.002748669 | GO:0008864 |
| dihydroneopterin aldolase activity | 0.002748669 | GO:0004150 |
| Glyoxylate and dicarboxylate metabolism | 0.003412919 | KEGG pathway |
| heptaprenyl diphosphate biosynthesis | 0.003851275 | plantCyc |
| hexaprenyl diphosphate biosynthesis | 0.003851275 | plantCyc |
| nonaprenyl diphosphate biosynthesis I | 0.003851275 | plantCyc |
| nonaprenyl diphosphate biosynthesis II | 0.003851275 | plantCyc |
| octaprenyl diphosphate biosynthesis | 0.003851275 | plantCyc |
| superpathway of plastoquinol biosynthesis | 0.003851275 | plantCyc |
| heptaprenyl diphosphate synthase activity | 0.004580303 | GO:0036422 |
| 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I | 0.005500846 | plantCyc |
| Folate biosynthesis | 0.009090633 | KEGG pathway |
| polyisoprenoid biosynthesis | 0.009622213 | plantCyc |
| geranylgeranyl diphosphate biosynthesis | 0.009793689 | plantCyc |
| superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) | 0.009793689 | plantCyc |
| superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) | 0.009793689 | plantCyc |
| folic acid biosynthetic process | 0.012117839 | GO:0046656 |
| tetrahydrofolate biosynthesis II | 0.014097573 | plantCyc |
| chromosome segregation | 0.015136558 | GO:0007059 |
| tetrahydrofolate biosynthetic process | 0.015136558 | GO:0046654 |
| 'de novo' IMP biosynthetic process | 0.015136558 | GO:0006189 |
| small-subunit processome | 0.017907868 | GO:0032040 |
| snoRNA binding | 0.018623593 | GO:0030515 |
| regulation of gene expression | 0.019157681 | GO:0010468 |
| isoprenoid biosynthetic process | 0.019157681 | GO:0008299 |
| Terpenoid backbone biosynthesis | 0.019633618 | KEGG pathway |
| rRNA processing | 0.030944788 | GO:0006364 |
| RNA secondary structure unwinding | 0.030944788 | GO:0010501 |
| translational initiation | 0.034185063 | GO:0006413 |
| amino acid binding | 0.034242815 | GO:0016597 |
| Ubiquitin_Proteasome_system, E3 adaptor: DWD | 0.041052335 | ubs family |
| Photosynthesis | 0.045148813 | KEGG pathway |
| ATP-dependent RNA helicase activity | 0.04784232 | GO:0004004 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001257 | AT4G17360 (9.00E-136) | Formyl transferase |
| CRO_T004169 | AT1G23465 (2.00E-42) | Peptidase S24/S26A/S26B/S26C family protein |
| CRO_T013586 | AT1G48630 (3.00E-16) | RACK1B|receptor for activated C kinase 1B |
| CRO_T015761 | AT1G51580 (1.00E-18) | RNA-binding KH domain-containing protein |
| CRO_T022565 | AT5G60990 (7.00E-31) | DEA(D/H)-box RNA helicase family protein |
| CRO_T023935 | AT3G11750 (3.00E-41) | FOLB1|Dihydroneopterin aldolase |
| CRO_T033493 | AT1G09820 (4.00E-16) | Pentatricopeptide repeat (PPR-like) superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000311 | formyltetrahydrofolate deformylase activity purine nucleotide binding cyanoalanine nitrilase activity phosphoenolpyruvate carboxykinase activity hydroxymethyl-, formyl- and related transferase activity 3-cyanoalanine hydratase activity cyanide detoxification I L-asparagine degradation I Glyoxylate and dicarboxylate metabolism cyanide catabolic process embryonic pattern specification detoxification of nitrogen compound superpathway of aspartate and asparagine biosynthesis myosin heavy chain kinase activity Pwp2p-containing subcomplex of 90S preribosome gluconeogenesis 'de novo' IMP biosynthetic process Cyanoamino acid metabolism snoRNA binding maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) amino acid binding mRNA surveillance pathway Ribosome biogenesis in eukaryotes cell division Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TreatCFM000494 | heptaprenyl diphosphate biosynthesis hexaprenyl diphosphate biosynthesis nonaprenyl diphosphate biosynthesis I nonaprenyl diphosphate biosynthesis II octaprenyl diphosphate biosynthesis superpathway of plastoquinol biosynthesis Transcription_related, Transcription factor: BES1 trans-octaprenyltranstransferase activity all-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate specific) activity geranylgeranyl diphosphate biosynthesis polyisoprenoid biosynthesis superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) heptaprenyl diphosphate synthase activity 3'-5'-exoribonuclease activity N-acetyltransferase activity hydrolase activity | details |
| TreatCFM000719 | trans-octaprenyltranstransferase activity all-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate specific) activity dihydroneopterin aldolase activity heptaprenyl diphosphate synthase activity heptaprenyl diphosphate biosynthesis hexaprenyl diphosphate biosynthesis nonaprenyl diphosphate biosynthesis I nonaprenyl diphosphate biosynthesis II octaprenyl diphosphate biosynthesis superpathway of plastoquinol biosynthesis 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I folic acid biosynthetic process aminopeptidase activity tetrahydrofolate biosynthetic process polyisoprenoid biosynthesis geranylgeranyl diphosphate biosynthesis superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) Folate biosynthesis tetrahydrofolate biosynthesis II chloroplast thylakoid lumen 90S preribosome Terpenoid backbone biosynthesis manganese ion binding isoprenoid biosynthetic process maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) small-subunit processome methyltransferase activity Photosynthesis | details |
| TreatCFM001159 | 5-aminoimidazole ribonucleotide biosynthesis I cytoplasmic ribonucleoprotein granule phosphoribosylformylglycinamidine cyclo-ligase activity AMPK signaling pathway protein secretion malate transmembrane transport chromosome segregation vesicle docking involved in exocytosis 'de novo' IMP biosynthetic process regulation of gene expression | details |
| TreatCFM001279 | UMP biosynthesis I dihydroorotate dehydrogenase activity hydroxymethyl-, formyl- and related transferase activity formyltetrahydrofolate deformylase activity Glyoxylate and dicarboxylate metabolism protein refolding regulation of leaf development pyrimidine ribonucleotide biosynthetic process 'de novo' IMP biosynthetic process 'de novo' pyrimidine nucleobase biosynthetic process Transcription_related, Transcription factor: TCP Pyrimidine metabolism mitochondrion amino acid binding RNA degradation | details |
| TreatCFM001304 | Cytochrome_P450, Cytochrome P450: CYP94D dihydroneopterin aldolase activity hydroxymethyl-, formyl- and related transferase activity cyanoalanine nitrilase activity formyltetrahydrofolate deformylase activity 3-cyanoalanine hydratase activity folic acid biosynthetic process cyanide catabolic process detoxification of nitrogen compound Glyoxylate and dicarboxylate metabolism tetrahydrofolate biosynthetic process 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I cyanide detoxification I L-asparagine degradation I Cyanoamino acid metabolism Folate biosynthesis 'de novo' IMP biosynthetic process aromatase activity superpathway of aspartate and asparagine biosynthesis tetrahydrofolate biosynthesis II snoRNA binding rRNA processing amino acid binding | details |
| TreatCFM001470 | putrescine biosynthesis II putrescine biosynthetic process hydroxymethyl-, formyl- and related transferase activity agmatine deiminase activity protein-arginine deiminase activity formyltetrahydrofolate deformylase activity Glyoxylate and dicarboxylate metabolism 'de novo' IMP biosynthetic process structural constituent of ribosome Cul3-RING ubiquitin ligase complex mitochondrial small ribosomal subunit Arginine and proline metabolism large ribosomal subunit amino acid binding | details |
| TreatCFM001621 | cytoplasmic ribonucleoprotein granule AMPK signaling pathway vesicle docking involved in exocytosis protein secretion chromosome segregation regulation of gene expression small-subunit processome rRNA processing RNA secondary structure unwinding translational initiation Ubiquitin_Proteasome_system, E3 adaptor: DWD small GTPase mediated signal transduction protein dephosphorylation | details |
Expression profiles
 Show details about module gene expression profiling |