TreatCFM001159's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| 5-aminoimidazole ribonucleotide biosynthesis I | 0.001594896 | plantCyc |
| cytoplasmic ribonucleoprotein granule | 0.007818687 | GO:0036464 |
| phosphoribosylformylglycinamidine cyclo-ligase activity | 0.015578697 | GO:0004641 |
| AMPK signaling pathway | 0.018304489 | KEGG pathway |
| protein secretion | 0.021177093 | GO:0009306 |
| malate transmembrane transport | 0.021177093 | GO:0071423 |
| chromosome segregation | 0.021177093 | GO:0007059 |
| vesicle docking involved in exocytosis | 0.021177093 | GO:0006904 |
| 'de novo' IMP biosynthetic process | 0.021177093 | GO:0006189 |
| regulation of gene expression | 0.02791889 | GO:0010468 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002380 | AT1G08070 (6.00E-102) | EMB3102|EMBRYO DEFECTIVE 3102; OTP82|ORGANELLE TRANSCRIPT PROCESSING 82 |
| CRO_T004255 | AT3G05240 (2.00E-83) | MEF19|mitochondrial editing factor 19 |
| CRO_T006290 | AT1G25480 (7.00E-153) | Aluminium activated malate transporter family protein |
| CRO_T018061 | AT5G59840 (2.00E-64) | Ras-related small GTP-binding family protein |
| CRO_T022565 | AT5G60990 (7.00E-31) | DEA(D/H)-box RNA helicase family protein |
| CRO_T029040 | AT3G55010 (3.00E-145) | EMB2818|EMBRYO DEFECTIVE 2818 |
| CRO_T030630 | AT2G46920 (2.00E-19) | POL|poltergeist |
| CRO_T032979 | AT3G61430 (3.00E-109) | ATPIP1|PLASMA MEMBRANE INTRINSIC PROTEIN 1; PIP1; 1|PLASMA MEMBRANE INTRINSIC PROTEIN 1; 1; PIP1A|plasma membrane intrinsic protein 1A |
| CRO_T033052 | AT3G05240 (1.00E-53) | MEF19|mitochondrial editing factor 19 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000494 | heptaprenyl diphosphate biosynthesis hexaprenyl diphosphate biosynthesis nonaprenyl diphosphate biosynthesis I nonaprenyl diphosphate biosynthesis II octaprenyl diphosphate biosynthesis superpathway of plastoquinol biosynthesis Transcription_related, Transcription factor: BES1 trans-octaprenyltranstransferase activity all-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate specific) activity geranylgeranyl diphosphate biosynthesis polyisoprenoid biosynthesis superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) heptaprenyl diphosphate synthase activity 3'-5'-exoribonuclease activity N-acetyltransferase activity hydrolase activity | details |
| TreatCFM000756 | putrescine biosynthesis II putrescine biosynthetic process response to pH protein-arginine deiminase activity agmatine deiminase activity hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 Wnt signaling pathway Arginine and proline metabolism aminopeptidase activity Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) Transcription_related, Transcription factor: Orphans manganese ion binding intracellular | details |
| TreatCFM001561 | rRNA modification box C/D snoRNP complex snoRNA binding small-subunit processome Ribosome biogenesis in eukaryotes phosphatidylethanolamine biosynthesis I malate transmembrane transport malate transmembrane transporter activity histone acetyltransferase activity histone acetylation Glycerophospholipid metabolism lyase activity plant-type vacuole membrane lipid metabolic process | details |
| TreatCFM001621 | cytoplasmic ribonucleoprotein granule AMPK signaling pathway vesicle docking involved in exocytosis protein secretion chromosome segregation regulation of gene expression small-subunit processome rRNA processing RNA secondary structure unwinding translational initiation Ubiquitin_Proteasome_system, E3 adaptor: DWD small GTPase mediated signal transduction protein dephosphorylation | details |
| TreatCFM001622 | cytoplasmic ribonucleoprotein granule hydroxymethyl-, formyl- and related transferase activity all-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate specific) activity trans-octaprenyltranstransferase activity formyltetrahydrofolate deformylase activity dihydroneopterin aldolase activity Glyoxylate and dicarboxylate metabolism heptaprenyl diphosphate biosynthesis hexaprenyl diphosphate biosynthesis nonaprenyl diphosphate biosynthesis I nonaprenyl diphosphate biosynthesis II octaprenyl diphosphate biosynthesis superpathway of plastoquinol biosynthesis heptaprenyl diphosphate synthase activity 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I Folate biosynthesis polyisoprenoid biosynthesis geranylgeranyl diphosphate biosynthesis superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) folic acid biosynthetic process tetrahydrofolate biosynthesis II chromosome segregation tetrahydrofolate biosynthetic process 'de novo' IMP biosynthetic process small-subunit processome snoRNA binding regulation of gene expression isoprenoid biosynthetic process Terpenoid backbone biosynthesis rRNA processing RNA secondary structure unwinding translational initiation amino acid binding Ubiquitin_Proteasome_system, E3 adaptor: DWD Photosynthesis ATP-dependent RNA helicase activity | details |
| TreatCFM001872 | spermine and spermidine degradation III hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc mRNA cap binding complex mRNA (guanine-N7-)-methyltransferase activity ribonuclease P activity trehalose-phosphatase activity RNA (guanine-N7)-methylation 7-methylguanosine mRNA capping protein lipoylation malate transmembrane transport malate transmembrane transporter activity trehalose biosynthetic process tRNA processing Transcription_related, Transcription factor: bHLH RNA phosphodiester bond hydrolysis, endonucleolytic | details |
Expression profiles
 Show details about module gene expression profiling |