TreatCFM001470's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| putrescine biosynthesis II | 0.001063594 | plantCyc |
| putrescine biosynthetic process | 0.001950499 | GO:0009446 |
| hydroxymethyl-, formyl- and related transferase activity | 0.002257322 | GO:0016742 |
| agmatine deiminase activity | 0.002257322 | GO:0047632 |
| protein-arginine deiminase activity | 0.002257322 | GO:0004668 |
| formyltetrahydrofolate deformylase activity | 0.002257322 | GO:0008864 |
| Glyoxylate and dicarboxylate metabolism | 0.002925532 | KEGG pathway |
| 'de novo' IMP biosynthetic process | 0.004873365 | GO:0006189 |
| structural constituent of ribosome | 0.00740105 | GO:0003735 |
| Cul3-RING ubiquitin ligase complex | 0.010115924 | GO:0031463 |
| mitochondrial small ribosomal subunit | 0.010115924 | GO:0005763 |
| Arginine and proline metabolism | 0.014598507 | KEGG pathway |
| large ribosomal subunit | 0.018185807 | GO:0015934 |
| amino acid binding | 0.030013245 | GO:0016597 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001257 | AT4G17360 (9.00E-136) | Formyl transferase |
| CRO_T008477 | AT5G08170 (4.00E-147) | ATAIH|AGMATINE IMINOHYDROLASE; EMB1873|EMBRYO DEFECTIVE 1873 |
| CRO_T011866 | AT3G63220 (6.00E-17) | Galactose oxidase/kelch repeat superfamily protein |
| CRO_T011881 | - | - |
| CRO_T019229 | AT1G54320 (1.00E-113) | LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein |
| CRO_T031544 | AT1G16870 (4.00E-138) | mitochondrial 28S ribosomal protein S29-related |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000311 | formyltetrahydrofolate deformylase activity purine nucleotide binding cyanoalanine nitrilase activity phosphoenolpyruvate carboxykinase activity hydroxymethyl-, formyl- and related transferase activity 3-cyanoalanine hydratase activity cyanide detoxification I L-asparagine degradation I Glyoxylate and dicarboxylate metabolism cyanide catabolic process embryonic pattern specification detoxification of nitrogen compound superpathway of aspartate and asparagine biosynthesis myosin heavy chain kinase activity Pwp2p-containing subcomplex of 90S preribosome gluconeogenesis 'de novo' IMP biosynthetic process Cyanoamino acid metabolism snoRNA binding maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) amino acid binding mRNA surveillance pathway Ribosome biogenesis in eukaryotes cell division Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TreatCFM000756 | putrescine biosynthesis II putrescine biosynthetic process response to pH protein-arginine deiminase activity agmatine deiminase activity hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 Wnt signaling pathway Arginine and proline metabolism aminopeptidase activity Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) Transcription_related, Transcription factor: Orphans manganese ion binding intracellular | details |
| TreatCFM001279 | UMP biosynthesis I dihydroorotate dehydrogenase activity hydroxymethyl-, formyl- and related transferase activity formyltetrahydrofolate deformylase activity Glyoxylate and dicarboxylate metabolism protein refolding regulation of leaf development pyrimidine ribonucleotide biosynthetic process 'de novo' IMP biosynthetic process 'de novo' pyrimidine nucleobase biosynthetic process Transcription_related, Transcription factor: TCP Pyrimidine metabolism mitochondrion amino acid binding RNA degradation | details |
| TreatCFM001304 | Cytochrome_P450, Cytochrome P450: CYP94D dihydroneopterin aldolase activity hydroxymethyl-, formyl- and related transferase activity cyanoalanine nitrilase activity formyltetrahydrofolate deformylase activity 3-cyanoalanine hydratase activity folic acid biosynthetic process cyanide catabolic process detoxification of nitrogen compound Glyoxylate and dicarboxylate metabolism tetrahydrofolate biosynthetic process 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I cyanide detoxification I L-asparagine degradation I Cyanoamino acid metabolism Folate biosynthesis 'de novo' IMP biosynthetic process aromatase activity superpathway of aspartate and asparagine biosynthesis tetrahydrofolate biosynthesis II snoRNA binding rRNA processing amino acid binding | details |
| TreatCFM001622 | cytoplasmic ribonucleoprotein granule hydroxymethyl-, formyl- and related transferase activity all-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate specific) activity trans-octaprenyltranstransferase activity formyltetrahydrofolate deformylase activity dihydroneopterin aldolase activity Glyoxylate and dicarboxylate metabolism heptaprenyl diphosphate biosynthesis hexaprenyl diphosphate biosynthesis nonaprenyl diphosphate biosynthesis I nonaprenyl diphosphate biosynthesis II octaprenyl diphosphate biosynthesis superpathway of plastoquinol biosynthesis heptaprenyl diphosphate synthase activity 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I Folate biosynthesis polyisoprenoid biosynthesis geranylgeranyl diphosphate biosynthesis superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) folic acid biosynthetic process tetrahydrofolate biosynthesis II chromosome segregation tetrahydrofolate biosynthetic process 'de novo' IMP biosynthetic process small-subunit processome snoRNA binding regulation of gene expression isoprenoid biosynthetic process Terpenoid backbone biosynthesis rRNA processing RNA secondary structure unwinding translational initiation amino acid binding Ubiquitin_Proteasome_system, E3 adaptor: DWD Photosynthesis ATP-dependent RNA helicase activity | details |
| TreatCFM001940 | mitochondrial small ribosomal subunit Transcription_related, Transcription factor: TCP regulation of leaf development solute:proton antiporter activity endonuclease activity nucleic acid phosphodiester bond hydrolysis hydrogen ion transmembrane transport | details |
| TreatCFM001941 | transcription factor TFIIE complex Basal transcription factors transcription initiation from RNA polymerase II promoter translational initiation | details |
Expression profiles
 Show details about module gene expression profiling |