TreatCFM000821's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| lipid binding | 0.0011481 | GO:0008289 |
| Transcription_related, Transcription factor: NF-YA | 0.005116655 | TF family |
| Transcription_related, Transcription regulator: TAZ | 0.005116655 | TF family |
| mRNA surveillance pathway | 0.017250568 | KEGG pathway |
| nucleus | 0.018675586 | GO:0005634 |
| Ubiquitin_Proteasome_system, E3 adaptor: BTB | 0.021887394 | ubs family |
| embryo sac development | 0.030360209 | GO:0009553 |
| histone acetylation | 0.030360209 | GO:0016573 |
| RNA secondary structure unwinding | 0.031061339 | GO:0010501 |
| pollen development | 0.031061339 | GO:0009555 |
| histone acetyltransferase activity | 0.038887729 | GO:0004402 |
| transcription cofactor activity | 0.038887729 | GO:0003712 |
| DNA binding | 0.046869761 | GO:0003677 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T009975 | AT1G16710 (1.00E-09) | HAC12|histone acetyltransferase of the CBP family 12 |
| CRO_T022452 | AT1G30500 (2.00E-20) | NF-YA7|nuclear factor Y, subunit A7 |
| CRO_T022792 | AT1G08030 (2.00E-129) | AQC1|active quiescent center1; TPST|tyrosylprotein sulfotransferase |
| CRO_T023421 | AT4G11060 (2.00E-67) | MTSSB|mitochondrially targeted single-stranded DNA binding protein |
| CRO_T025538 | AT5G54910 (0) | DEA(D/H)-box RNA helicase family protein |
| CRO_T031296 | AT4G04180 (7.00E-17) | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| CRO_T032985 | AT2G42810 (3.00E-58) | AtPP5|protein phosphatase 5; PAPP5|Phytochrome-Associated Protein Phosphatase 5; PP5.2|protein phosphatase 5.2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000239 | protein dephosphorylation chloroplast fission RNA biosynthetic process extrinsic component of plastid membrane plastid part Transcription_related, Transcription factor: NF-YA Transcription_related, Transcription regulator: LIM microtubule cytoskeleton cytoskeletal part chloroplast outer membrane triacylglycerol degradation mRNA surveillance pathway | details |
| TreatCFM000691 | Transcription_related, Transcription regulator: TAZ D-myo-inositol (1,4,5)-trisphosphate degradation gluconeogenesis I sporopollenin precursors biosynthesis nucleus sporopollenin biosynthetic process malate metabolic process phosphatidylinositol dephosphorylation embryo sac development histone acetylation malate dehydrogenase (decarboxylating) (NAD+) activity cinnamoyl-CoA reductase activity Transcription_related, Transcription factor: NAC Ubiquitin_Proteasome_system, E3 adaptor: BTB regulation of transcription, DNA-templated pollen development histone acetyltransferase activity transcription cofactor activity | details |
| TreatCFM000849 | regulation of ruffle assembly Transcription_related, Transcription factor: RWP-RK chloroplast fission extrinsic component of plastid membrane ruffle membrane plastid part chloroplast outer membrane phosphatidylinositol binding protein self-association | details |
| TreatCFM001167 | Autophagy - yeast Protein_kinases_phosphatases, PPC:4.5.4: GSK3/Shaggy Like Protein Kinase Family tau-protein kinase activity | details |
| TreatCFM001370 | gluconeogenesis I lipid binding Transcription_related, Transcription factor: NF-YA D-myo-inositol (1,4,5)-trisphosphate degradation flavin biosynthesis I (bacteria and plants) GTP cyclohydrolase II activity 3,4-dihydroxy-2-butanone-4-phosphate synthase activity Riboflavin metabolism malate dehydrogenase (decarboxylating) (NAD+) activity malate metabolic process riboflavin biosynthetic process phosphatidylinositol dephosphorylation microtubule cytoskeleton cytoskeletal part | details |
| TreatCFM001411 | xylogalacturonan biosynthesis rRNA (guanine-N7)-methylation peptidyl-glutamine methylation formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:4.5.4: GSK3/Shaggy Like Protein Kinase Family Ubiquitin_Proteasome_system, DUB: OTU RIG-I-like receptor signaling pathway ER to Golgi transport vesicle membrane pre-autophagosomal structure late endosome membrane Golgi apparatus Golgi to vacuole transport autophagosome assembly cytoskeleton organization vesicle fusion with Golgi apparatus Autophagy - animal protein deubiquitination retrograde transport, endosome to Golgi intra-Golgi vesicle-mediated transport protein targeting to vacuole tRNA methylation | details |
| TreatCFM001441 | UTP-C complex CURI complex tRNA export from nucleus hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription regulator: SET glycosyl compound metabolic process rRNA processing RNA secondary structure unwinding Glycerolipid metabolism Ribosome biogenesis in eukaryotes small-subunit processome beta-glucosidase activity ATP-dependent RNA helicase activity | details |
| TreatCFM001849 | Transcription_related, Transcription factor: NF-YA autophagosome assembly Herpes simplex infection pre-autophagosomal structure Autophagy - animal mitochondrial matrix DNA binding lipid binding ubiquitin protein ligase binding phosphoprotein phosphatase activity mRNA surveillance pathway Ubiquitin mediated proteolysis protein ubiquitination protein dephosphorylation ubiquitin protein ligase activity | details |
Expression profiles
 Show details about module gene expression profiling |