TreatCFM001441's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| UTP-C complex | 0.002216312 | GO:0034456 |
| CURI complex | 0.002216312 | GO:0032545 |
| tRNA export from nucleus | 0.004048762 | GO:0006409 |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.009286528 | cazy family |
| Transcription_related, Transcription regulator: SET | 0.009286528 | TF family |
| glycosyl compound metabolic process | 0.020216906 | GO:1901657 |
| rRNA processing | 0.020690202 | GO:0006364 |
| RNA secondary structure unwinding | 0.020690202 | GO:0010501 |
| Glycerolipid metabolism | 0.022469848 | KEGG pathway |
| Ribosome biogenesis in eukaryotes | 0.022469848 | KEGG pathway |
| small-subunit processome | 0.028449957 | GO:0032040 |
| beta-glucosidase activity | 0.046336691 | GO:0008422 |
| ATP-dependent RNA helicase activity | 0.046336691 | GO:0004004 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000496 | AT1G26760 (7.00E-08) | SDG35|SET domain protein 35 |
| CRO_T005571 | AT5G36890 (7.00E-15) | BGLU42|beta glucosidase 42 |
| CRO_T006616 | AT5G40640 (3.00E-168) | unknown protein |
| CRO_T025538 | AT5G54910 (0) | DEA(D/H)-box RNA helicase family protein |
| CRO_T030359 | AT5G42710 (5.00E-38) | TRM30|TON1 Recruiting Motif 30 |
| CRO_T032078 | AT1G63810 (6.00E-87) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000239 | protein dephosphorylation chloroplast fission RNA biosynthetic process extrinsic component of plastid membrane plastid part Transcription_related, Transcription factor: NF-YA Transcription_related, Transcription regulator: LIM microtubule cytoskeleton cytoskeletal part chloroplast outer membrane triacylglycerol degradation mRNA surveillance pathway | details |
| TreatCFM000821 | lipid binding Transcription_related, Transcription factor: NF-YA Transcription_related, Transcription regulator: TAZ mRNA surveillance pathway nucleus Ubiquitin_Proteasome_system, E3 adaptor: BTB embryo sac development histone acetylation RNA secondary structure unwinding pollen development histone acetyltransferase activity transcription cofactor activity DNA binding | details |
| TreatCFM001439 | Alanine, aspartate and glutamate metabolism nuclear-transcribed mRNA catabolic process formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Glycerolipid metabolism hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds large ribosomal subunit rRNA binding nitrogen compound metabolic process glycosyl compound metabolic process ribosomal large subunit assembly cytoplasmic translation rRNA processing beta-glucosidase activity | details |
| TreatCFM001440 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc glycosyl compound metabolic process Glycerolipid metabolism beta-glucosidase activity nuclear-transcribed mRNA catabolic process Alanine, aspartate and glutamate metabolism carbohydrate metabolic process hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds large ribosomal subunit rRNA binding cytoplasmic translation nitrogen compound metabolic process ribosomal large subunit assembly rRNA processing transferase activity, transferring acyl groups | details |
| TreatCFM001689 | CURI complex UTP-C complex hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc diphthine synthase activity peptidyl-diphthamide biosynthetic process from peptidyl-histidine tRNA export from nucleus Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) Transcription_related, Transcription regulator: SET histone acetylation histone acetyltransferase activity MAPK signaling pathway - plant Ribosome biogenesis in eukaryotes small-subunit processome rRNA processing | details |
Expression profiles
 Show details about module gene expression profiling |