TreatCFM000849's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| regulation of ruffle assembly | 0.001595745 | GO:1900027 |
| Transcription_related, Transcription factor: RWP-RK | 0.002657217 | TF family |
| chloroplast fission | 0.002658199 | GO:0010020 |
| extrinsic component of plastid membrane | 0.002698776 | GO:0035452 |
| ruffle membrane | 0.002698776 | GO:0032587 |
| plastid part | 0.002698776 | GO:0044435 |
| chloroplast outer membrane | 0.006573894 | GO:0009707 |
| phosphatidylinositol binding | 0.02223531 | GO:0035091 |
| protein self-association | 0.02223531 | GO:0043621 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002099 | AT1G29800 (0) | RING/FYVE/PHD-type zinc finger family protein |
| CRO_T008561 | AT1G20640 (0) | NLP4|NIN-like protein 4 |
| CRO_T013178 | AT1G75010 (9.00E-08) | ARC3|ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 |
| CRO_T018099 | AT1G53460 (2.00E-56) | |
| CRO_T031296 | AT4G04180 (7.00E-17) | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| CRO_T031892 | AT2G26420 (0.000001) | PIP5K3|1-phosphatidylinositol-4-phosphate 5-kinase 3 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000239 | protein dephosphorylation chloroplast fission RNA biosynthetic process extrinsic component of plastid membrane plastid part Transcription_related, Transcription factor: NF-YA Transcription_related, Transcription regulator: LIM microtubule cytoskeleton cytoskeletal part chloroplast outer membrane triacylglycerol degradation mRNA surveillance pathway | details |
| TreatCFM000821 | lipid binding Transcription_related, Transcription factor: NF-YA Transcription_related, Transcription regulator: TAZ mRNA surveillance pathway nucleus Ubiquitin_Proteasome_system, E3 adaptor: BTB embryo sac development histone acetylation RNA secondary structure unwinding pollen development histone acetyltransferase activity transcription cofactor activity DNA binding | details |
| TreatCFM001294 | phosphatidylinositol binding regulation of barrier septum assembly hypoxanthine salvage inosine biosynthetic process adenosine catabolic process histidinol dehydrogenase activity flavin-linked sulfhydryl oxidase activity regulation of ruffle assembly Ubiquitin_Proteasome_system, E3: HECT Transcription_related, Transcription regulator: mTERF ATPase binding adenosine deaminase activity detoxification of reactive carbonyls in chloroplasts L-histidine biosynthesis traumatin and (Z)-3-hexen-1-yl acetate biosynthesis protein metabolic process chloroplast fission histidine biosynthetic process endosome organization trichome branching protein histidine kinase binding | details |
| TreatCFM001370 | gluconeogenesis I lipid binding Transcription_related, Transcription factor: NF-YA D-myo-inositol (1,4,5)-trisphosphate degradation flavin biosynthesis I (bacteria and plants) GTP cyclohydrolase II activity 3,4-dihydroxy-2-butanone-4-phosphate synthase activity Riboflavin metabolism malate dehydrogenase (decarboxylating) (NAD+) activity malate metabolic process riboflavin biosynthetic process phosphatidylinositol dephosphorylation microtubule cytoskeleton cytoskeletal part | details |
Expression profiles
 Show details about module gene expression profiling |