TreatCFM000902's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Vitamin digestion and absorption | 0.001241171 | KEGG pathway |
| molybdenum cofactor biosynthesis | 0.003718236 | plantCyc |
| secondary shoot formation | 0.005169714 | GO:0010223 |
| strigolactone biosynthetic process | 0.005169714 | GO:1901601 |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.011369337 | cazy family |
| proteasome-mediated ubiquitin-dependent protein catabolic process | 0.032593836 | GO:0043161 |
| Ubiquitin_Proteasome_system, E3 adaptor: BTB | 0.032831092 | ubs family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T010593 | AT3G03990 (1.00E-94) | alpha/beta-Hydrolases superfamily protein |
| CRO_T014678 | AT1G63850 (3.00E-11) | BTB/POZ domain-containing protein |
| CRO_T020503 | AT2G01735 (4.00E-13) | RIE1|RING-finger protein for embryogenesis |
| CRO_T024431 | AT2G28720 (3.00E-43) | Histone superfamily protein |
| CRO_T026940 | AT2G29760 (3.00E-80) | OTP81|ORGANELLE TRANSCRIPT PROCESSING 81 |
| CRO_T031232 | AT5G01460 (2.00E-171) | LMBR1-like membrane protein |
| CRO_T032700 | AT5G14450 (8.00E-71) | GDSL-like Lipase/Acylhydrolase superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000683 | Spliceosome Vitamin digestion and absorption molybdenum cofactor biosynthesis Transcription_related, Transcription factor: BBR-BPC Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase Cell cycle Protein export NADPH-hemoprotein reductase activity endoplasmic reticulum signal peptide binding signal recognition particle binding signal recognition particle, endoplasmic reticulum targeting 7S RNA binding nucleotide binding FMN binding calcium-dependent protein serine/threonine kinase activity calmodulin-dependent protein kinase activity | details |
| TreatCFM001246 | TNF signaling pathway NF-kappa B signaling pathway Cytochrome_P450, Cytochrome P450: CYP71B hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:1.11.1: Legume Lectin Domain Kinase ethylene biosynthesis I (plants) Flavonoid biosynthesis flavonoid biosynthesis (in equisetum) flavonol biosynthesis gibberellin biosynthesis I (non C-3, non C-13 hydroxylation) gibberellin biosynthesis III (early C-13 hydroxylation) leucodelphinidin biosynthesis pinobanksin biosynthesis syringetin biosynthesis vindoline and vinblastine biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM001289 | histone methyltransferase activity (H3-K9 specific) methyl-CpNpN binding steroid dehydrogenase activity methyl-CpNpG binding alcohol dehydrogenase (NADP+) activity NADP+ binding double-stranded methylated DNA binding oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen methyl-CpG binding monooxygenase activity endopeptidase activity enzyme regulator activity Cytochrome_P450, Cytochrome P450: CYP714A response to toxic substance maintenance of DNA methylation histone H3-K9 methylation response to absence of light regulation of protein catabolic process response to red light intracellular transport response to far red light positive regulation of G2/M transition of mitotic cell cycle cullin deneddylation proteasome storage granule Sec61 translocon complex | details |
| TreatCFM001395 | MicroRNAs in cancer L-amino acid transmembrane transporter activity antiporter activity integral component of plasma membrane L-amino acid transport L-alpha-amino acid transmembrane transport hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc amino acid transmembrane transport hydrolase activity, acting on ester bonds | details |
| TreatCFM001726 | L-phenylalanine biosynthesis II L-tyrosine biosynthesis II Transcription_related, Transcription factor: Whirly hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc MicroRNAs in cancer L-amino acid transport chorismate metabolic process L-alpha-amino acid transmembrane transport Ubiquitin_Proteasome_system, DUB: USP aromatic amino acid family biosynthetic process chorismate mutase activity defense response to fungus cellular protein metabolic process L-amino acid transmembrane transporter activity cysteine-type peptidase activity positive regulation of transcription, DNA-templated Biosynthesis of amino acids antiporter activity hydrolase activity, acting on ester bonds | details |
| TreatCFM001821 | mRNA splicing, via spliceosome Spliceosome Transcription_related, Transcription factor: Whirly MicroRNAs in cancer hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc DNA replication factor A complex L-amino acid transport L-alpha-amino acid transmembrane transport Ubiquitin_Proteasome_system, DUB: USP Prp19 complex Cul4-RING E3 ubiquitin ligase complex COPII vesicle coat Proteasome precatalytic spliceosome catalytic step 2 spliceosome defense response to fungus regulation of gene expression RNA secondary structure unwinding ER to Golgi vesicle-mediated transport cellular protein metabolic process positive regulation of transcription, DNA-templated | details |
Expression profiles
 Show details about module gene expression profiling |