TreatCFM001289's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| histone methyltransferase activity (H3-K9 specific) | 0.01878385 | GO:0046974 |
| methyl-CpNpN binding | 0.01878385 | GO:0010429 |
| steroid dehydrogenase activity | 0.01878385 | GO:0016229 |
| methyl-CpNpG binding | 0.01878385 | GO:0010428 |
| alcohol dehydrogenase (NADP+) activity | 0.01878385 | GO:0008106 |
| NADP+ binding | 0.01878385 | GO:0070401 |
| double-stranded methylated DNA binding | 0.024143886 | GO:0010385 |
| oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 0.025031078 | GO:0016705 |
| methyl-CpG binding | 0.025031078 | GO:0008327 |
| monooxygenase activity | 0.025592782 | GO:0004497 |
| endopeptidase activity | 0.025592782 | GO:0004175 |
| enzyme regulator activity | 0.028144162 | GO:0030234 |
| Cytochrome_P450, Cytochrome P450: CYP714A | 0.032154238 | CYP450 family |
| response to toxic substance | 0.042251801 | GO:0009636 |
| maintenance of DNA methylation | 0.042251801 | GO:0010216 |
| histone H3-K9 methylation | 0.042251801 | GO:0051567 |
| response to absence of light | 0.042251801 | GO:0009646 |
| regulation of protein catabolic process | 0.043767524 | GO:0042176 |
| response to red light | 0.043767524 | GO:0010114 |
| intracellular transport | 0.043767524 | GO:0046907 |
| response to far red light | 0.043767524 | GO:0010218 |
| positive regulation of G2/M transition of mitotic cell cycle | 0.043767524 | GO:0010971 |
| cullin deneddylation | 0.045005395 | GO:0010388 |
| proteasome storage granule | 0.047913947 | GO:0034515 |
| Sec61 translocon complex | 0.047913947 | GO:0005784 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004253 | AT1G67990 (1.00E-32) | ATTSM1|TAPETUM-SPECIFIC METHYLTRANSFERASE 1 |
| CRO_T008841 | - | - |
| CRO_T012042 | AT3G60540 (2.00E-15) | Preprotein translocase Sec, Sec61-beta subunit protein |
| CRO_T014644 | AT2G22740 (1.00E-40) | SDG23|SET DOMAIN PROTEIN 23; SUVH6|SU(VAR)3-9 homolog 6 |
| CRO_T015656 | AT3G26280 (5.00E-104) | CYP71B4|cytochrome P450, family 71, subfamily B, polypeptide 4 |
| CRO_T016955 | AT1G32230 (5.00E-78) | ATP8|P8 (INTERACTING PROTEIN); RCD1|RADICAL-INDUCED CELL DEATH1 |
| CRO_T016956 | AT1G32230 (1.00E-17) | ATP8|P8 (INTERACTING PROTEIN); RCD1|RADICAL-INDUCED CELL DEATH1 |
| CRO_T017046 | AT1G33475 (2.00E-52) | SNARE-like superfamily protein |
| CRO_T017138 | - | - |
| CRO_T017197 | AT2G17440 (7.00E-106) | PIRL5|plant intracellular ras group-related LRR 5 |
| CRO_T017635 | AT1G49240 (0) | ACT8|actin 8; FIZ1|FRIZZY AND KINKED SHOOTS |
| CRO_T019425 | AT2G24390 (9.00E-46) | AIG2-like (avirulence induced gene) family protein |
| CRO_T020822 | AT1G04810 (0) | 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit |
| CRO_T020905 | AT4G08690 (9.00E-19) | Sec14p-like phosphatidylinositol transfer family protein |
| CRO_T021902 | AT2G21260 (6.00E-44) | NAD(P)-linked oxidoreductase superfamily protein |
| CRO_T023134 | AT5G42970 (4.00E-104) | COP14|CONSTITUTIVE PHOTOMORPHOGENIC 14; COP8|CONSTITUTIVE PHOTOMORPHOGENIC 8; CSN4|COP9 SIGNALOSOME SUBUNIT 4; EMB134|EMBRYO DEFECTIVE 134; FUS4|FUSCA 4; FUS8|FUSCA 8 |
| CRO_T024337 | AT5G24900 (8.00E-172) | CYP714A2|cytochrome P450, family 714, subfamily A, polypeptide 2; ELA2|EUI-like p450 A2 |
| CRO_T025650 | - | - |
| CRO_T032020 | AT5G06740 (4.00E-107) | LecRK-S.5|L-type lectin receptor kinase S.5 |
| CRO_T032700 | AT5G14450 (8.00E-71) | GDSL-like Lipase/Acylhydrolase superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000259 | Oxidative phosphorylation ATP synthesis coupled proton transport proton-transporting ATPase activity, rotational mechanism hydrogen ion transmembrane transporter activity proton-transporting ATP synthase activity, rotational mechanism proton-transporting ATP synthase complex, catalytic core F(1) ATP hydrolysis coupled proton transport Progesterone-mediated oocyte maturation Protein_kinases_phosphatases, PPC:1.3.7: Receptor like protein kinase/Receptor lectin kinase like protein mitochondrion methyl indole-3-acetate esterase activity ketol-acid reductoisomerase activity photosynthetic acclimation indoleacetic acid conjugate metabolic process ATPase activity, coupled to transmembrane movement of ions, rotational mechanism valine biosynthetic process phosphatidylglycerol biosynthetic process CDP-diacylglycerol biosynthesis II L-valine biosynthesis methyl indole-3-acetate interconversion CDP-diacylglycerol biosynthetic process phosphatidate cytidylyltransferase activity | details |
| TreatCFM000360 | radial pattern formation bundle sheath cell fate specification regulation of cellular metabolic process maintenance of protein location in nucleus asymmetric cell division gravitropism glyoxylate cycle TCA cycle II (plants and fungi) Transcription_related, Transcription factor: GRAS gluconeogenesis I malate metabolic process leaf development tricarboxylic acid cycle L-malate dehydrogenase activity | details |
| TreatCFM000902 | Vitamin digestion and absorption molybdenum cofactor biosynthesis secondary shoot formation strigolactone biosynthetic process hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc proteasome-mediated ubiquitin-dependent protein catabolic process Ubiquitin_Proteasome_system, E3 adaptor: BTB | details |
| TreatCFM001246 | TNF signaling pathway NF-kappa B signaling pathway Cytochrome_P450, Cytochrome P450: CYP71B hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:1.11.1: Legume Lectin Domain Kinase ethylene biosynthesis I (plants) Flavonoid biosynthesis flavonoid biosynthesis (in equisetum) flavonol biosynthesis gibberellin biosynthesis I (non C-3, non C-13 hydroxylation) gibberellin biosynthesis III (early C-13 hydroxylation) leucodelphinidin biosynthesis pinobanksin biosynthesis syringetin biosynthesis vindoline and vinblastine biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM001288 | Protein_kinases_phosphatases, PPC:1.3.7: Receptor like protein kinase/Receptor lectin kinase like protein Progesterone-mediated oocyte maturation virus induced gene silencing posttranscriptional gene silencing by RNA cytoskeleton scopoletin biosynthesis chlorogenic acid biosynthesis I Phenylpropanoid biosynthesis phenylpropanoids methylation (ice plant) suberin monomers biosynthesis defense response to fungus plant-type cell wall organization hydrogen peroxide catabolic process O-methyltransferase activity | details |
| TreatCFM001369 | regulation of cellular metabolic process cullin deneddylation positive regulation of G2/M transition of mitotic cell cycle carbohydrate metabolic process Transcription_related, Transcription factor: C3H glyoxylate cycle TCA cycle II (plants and fungi) malate metabolic process phosphotransferase activity, alcohol group as acceptor L-malate dehydrogenase activity Sec61 translocon complex gluconeogenesis I tricarboxylic acid cycle COP9 signalosome Protein export proteasome complex | details |
| TreatCFM001395 | MicroRNAs in cancer L-amino acid transmembrane transporter activity antiporter activity integral component of plasma membrane L-amino acid transport L-alpha-amino acid transmembrane transport hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc amino acid transmembrane transport hydrolase activity, acting on ester bonds | details |
| TreatCFM001604 | steroid dehydrogenase activity NADP+ binding alcohol dehydrogenase (NADP+) activity detoxification of reactive carbonyls in chloroplasts virus induced gene silencing response to toxic substance response to absence of light response to far red light response to red light posttranscriptional gene silencing by RNA response to cold nuclear body protein homodimerization activity S-adenosylmethionine-dependent methyltransferase activity response to water deprivation response to salt stress | details |
| TreatCFM001726 | L-phenylalanine biosynthesis II L-tyrosine biosynthesis II Transcription_related, Transcription factor: Whirly hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc MicroRNAs in cancer L-amino acid transport chorismate metabolic process L-alpha-amino acid transmembrane transport Ubiquitin_Proteasome_system, DUB: USP aromatic amino acid family biosynthetic process chorismate mutase activity defense response to fungus cellular protein metabolic process L-amino acid transmembrane transporter activity cysteine-type peptidase activity positive regulation of transcription, DNA-templated Biosynthesis of amino acids antiporter activity hydrolase activity, acting on ester bonds | details |
| TreatCFM001779 | developmental process involved in reproduction detection of nutrient organ senescence vegetative phase change regulation of cellular metabolic process L-malate dehydrogenase activity protein tyrosine kinase activity glyoxylate cycle TCA cycle II (plants and fungi) sugar mediated signaling pathway Apelin signaling pathway primary root development gluconeogenesis I malate metabolic process tricarboxylic acid cycle zinc ion binding peptidyl-tyrosine phosphorylation abscisic acid-activated signaling pathway | details |
| TreatCFM001791 | condensed chromosome outer kinetochore spindle microtubule chromosome segregation cell division vesicle fusion exocytosis SNARE complex SNARE binding SNAP receptor activity microtubule binding transporter activity | details |
| TreatCFM001821 | mRNA splicing, via spliceosome Spliceosome Transcription_related, Transcription factor: Whirly MicroRNAs in cancer hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc DNA replication factor A complex L-amino acid transport L-alpha-amino acid transmembrane transport Ubiquitin_Proteasome_system, DUB: USP Prp19 complex Cul4-RING E3 ubiquitin ligase complex COPII vesicle coat Proteasome precatalytic spliceosome catalytic step 2 spliceosome defense response to fungus regulation of gene expression RNA secondary structure unwinding ER to Golgi vesicle-mediated transport cellular protein metabolic process positive regulation of transcription, DNA-templated | details |
| TreatCFM002120 | vesicle-mediated transport endopeptidase activity enzyme regulator activity regulation of protein catabolic process intracellular transport proteasome storage granule proteasome regulatory particle, base subcomplex membrane coat Transcription_related, Transcription factor: bHLH Autophagy - yeast Lysosome Proteasome regulation of catalytic activity protein transport proteasome-mediated ubiquitin-dependent protein catabolic process endomembrane system cellular process | details |
| TreatCFM002143 | cytosol Sec61 translocon complex aldose 1-epimerase activity intracellular transport hexose metabolic process positive regulation of G2/M transition of mitotic cell cycle cullin deneddylation COP9 signalosome membrane coat Thyroid hormone signaling pathway proteasome complex Transcription_related, Transcription factor: MYB Glycolysis / Gluconeogenesis Lysosome Protein export protein transporter activity | details |
Expression profiles
 Show details about module gene expression profiling |