TreatCFM001246's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| TNF signaling pathway | 0.002127408 | KEGG pathway |
| NF-kappa B signaling pathway | 0.016237764 | KEGG pathway |
| Cytochrome_P450, Cytochrome P450: CYP71B | 0.019751295 | CYP450 family |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.019751295 | cazy family |
| Protein_kinases_phosphatases, PPC:1.11.1: Legume Lectin Domain Kinase | 0.019751295 | kinase family |
| ethylene biosynthesis I (plants) | 0.030653401 | plantCyc |
| Flavonoid biosynthesis | 0.030653401 | KEGG pathway |
| flavonoid biosynthesis (in equisetum) | 0.030653401 | plantCyc |
| flavonol biosynthesis | 0.030653401 | plantCyc |
| gibberellin biosynthesis I (non C-3, non C-13 hydroxylation) | 0.030653401 | plantCyc |
| gibberellin biosynthesis III (early C-13 hydroxylation) | 0.030653401 | plantCyc |
| leucodelphinidin biosynthesis | 0.030653401 | plantCyc |
| pinobanksin biosynthesis | 0.030653401 | plantCyc |
| syringetin biosynthesis | 0.030653401 | plantCyc |
| vindoline and vinblastine biosynthesis | 0.033763946 | plantCyc |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.049560006 | cazy family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T009905 | AT5G40720 (2.00E-148) | Domain of unknown function (DUF23) |
| CRO_T015656 | AT3G26280 (5.00E-104) | CYP71B4|cytochrome P450, family 71, subfamily B, polypeptide 4 |
| CRO_T015757 | AT2G14120 (0) | DRP3B|dynamin related protein |
| CRO_T019425 | AT2G24390 (9.00E-46) | AIG2-like (avirulence induced gene) family protein |
| CRO_T019871 | AT4G10490 (5.00E-42) | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| CRO_T026940 | AT2G29760 (3.00E-80) | OTP81|ORGANELLE TRANSCRIPT PROCESSING 81 |
| CRO_T032020 | AT5G06740 (4.00E-107) | LecRK-S.5|L-type lectin receptor kinase S.5 |
| CRO_T032700 | AT5G14450 (8.00E-71) | GDSL-like Lipase/Acylhydrolase superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000902 | Vitamin digestion and absorption molybdenum cofactor biosynthesis secondary shoot formation strigolactone biosynthetic process hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc proteasome-mediated ubiquitin-dependent protein catabolic process Ubiquitin_Proteasome_system, E3 adaptor: BTB | details |
| TreatCFM001289 | histone methyltransferase activity (H3-K9 specific) methyl-CpNpN binding steroid dehydrogenase activity methyl-CpNpG binding alcohol dehydrogenase (NADP+) activity NADP+ binding double-stranded methylated DNA binding oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen methyl-CpG binding monooxygenase activity endopeptidase activity enzyme regulator activity Cytochrome_P450, Cytochrome P450: CYP714A response to toxic substance maintenance of DNA methylation histone H3-K9 methylation response to absence of light regulation of protein catabolic process response to red light intracellular transport response to far red light positive regulation of G2/M transition of mitotic cell cycle cullin deneddylation proteasome storage granule Sec61 translocon complex | details |
| TreatCFM001369 | regulation of cellular metabolic process cullin deneddylation positive regulation of G2/M transition of mitotic cell cycle carbohydrate metabolic process Transcription_related, Transcription factor: C3H glyoxylate cycle TCA cycle II (plants and fungi) malate metabolic process phosphotransferase activity, alcohol group as acceptor L-malate dehydrogenase activity Sec61 translocon complex gluconeogenesis I tricarboxylic acid cycle COP9 signalosome Protein export proteasome complex | details |
| TreatCFM001395 | MicroRNAs in cancer L-amino acid transmembrane transporter activity antiporter activity integral component of plasma membrane L-amino acid transport L-alpha-amino acid transmembrane transport hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc amino acid transmembrane transport hydrolase activity, acting on ester bonds | details |
| TreatCFM001703 | Transcription_related, Transcription factor: Whirly defense response to fungus transcription from RNA polymerase II promoter positive regulation of transcription from RNA polymerase II promoter formation of glycosidic bonds, GlycosylTransferases: GTnc positive regulation of transcription, DNA-templated core promoter sequence-specific DNA binding transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | details |
| TreatCFM001713 | RNA binding metal ion binding nucleotidyltransferase activity RNA processing vesicle-mediated transport cell part formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM001726 | L-phenylalanine biosynthesis II L-tyrosine biosynthesis II Transcription_related, Transcription factor: Whirly hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc MicroRNAs in cancer L-amino acid transport chorismate metabolic process L-alpha-amino acid transmembrane transport Ubiquitin_Proteasome_system, DUB: USP aromatic amino acid family biosynthetic process chorismate mutase activity defense response to fungus cellular protein metabolic process L-amino acid transmembrane transporter activity cysteine-type peptidase activity positive regulation of transcription, DNA-templated Biosynthesis of amino acids antiporter activity hydrolase activity, acting on ester bonds | details |
| TreatCFM001821 | mRNA splicing, via spliceosome Spliceosome Transcription_related, Transcription factor: Whirly MicroRNAs in cancer hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc DNA replication factor A complex L-amino acid transport L-alpha-amino acid transmembrane transport Ubiquitin_Proteasome_system, DUB: USP Prp19 complex Cul4-RING E3 ubiquitin ligase complex COPII vesicle coat Proteasome precatalytic spliceosome catalytic step 2 spliceosome defense response to fungus regulation of gene expression RNA secondary structure unwinding ER to Golgi vesicle-mediated transport cellular protein metabolic process positive regulation of transcription, DNA-templated | details |
| TreatCFM002143 | cytosol Sec61 translocon complex aldose 1-epimerase activity intracellular transport hexose metabolic process positive regulation of G2/M transition of mitotic cell cycle cullin deneddylation COP9 signalosome membrane coat Thyroid hormone signaling pathway proteasome complex Transcription_related, Transcription factor: MYB Glycolysis / Gluconeogenesis Lysosome Protein export protein transporter activity | details |
Expression profiles
 Show details about module gene expression profiling |