TreatCFM000935's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| DNA-directed RNA polymerase I complex | 0.006820998 | GO:0005736 |
| transcription from RNA polymerase I promoter | 0.010901268 | GO:0006360 |
| recognition of pollen | 0.010901268 | GO:0048544 |
| trehalose biosynthetic process | 0.010901268 | GO:0005992 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.011359262 | cazy family |
| Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III | 0.011359262 | kinase family |
| alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity | 0.012978843 | GO:0003825 |
| RNA polymerase I activity | 0.012978843 | GO:0001054 |
| Starch and sucrose metabolism | 0.026993026 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001138 | AT5G41680 (1.00E-17) | Protein kinase superfamily protein |
| CRO_T002040 | AT1G53040 (2.00E-164) | Protein of unknown function (DUF616) |
| CRO_T007418 | AT1G75670 (7.00E-23) | DNA-directed RNA polymerases |
| CRO_T007739 | AT1G19025 (3.00E-77) | DNA repair metallo-beta-lactamase family protein |
| CRO_T021874 | AT3G21295 (3.00E-24) | Tudor/PWWP/MBT superfamily protein |
| CRO_T023655 | AT1G78580 (0) | ATTPS1|trehalose-6-phosphate synthase; TPS1|TREHALOSE-6-PHOSPHATE SYNTHASE 1 |
| CRO_T028853 | AT3G12590 (0) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000658 | production of siRNA involved in chromatin silencing by small RNA long-distance posttranscriptional gene silencing Peroxisome transcription, RNA-templated cell-cell signaling mitochondrial respiratory chain complex IV assembly production of siRNA involved in RNA interference cytoskeleton organization RNA-directed RNA polymerase activity defense response to fungus single-organism cellular process embryo development ending in seed dormancy | details |
| TreatCFM001263 | ER membrane protein complex DNA-directed RNA polymerase I complex protein folding in endoplasmic reticulum transcription from RNA polymerase I promoter RNA polymerase I activity single-organism metabolic process Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| TreatCFM001515 | UDP-D-galacturonate biosynthesis II (from D-galacturonate) ER membrane protein complex DNA-directed RNA polymerase I complex ATP-dependent 5'-3' DNA helicase activity protein folding in endoplasmic reticulum Ubiquitin_Proteasome_system, E3 adaptor: BTB transcription from RNA polymerase I promoter RNA polymerase I activity phosphotransferase activity, alcohol group as acceptor Amino sugar and nucleotide sugar metabolism DNA duplex unwinding | details |
| TreatCFM001559 | homogalacturonan biosynthesis Amino sugar and nucleotide sugar metabolism pectin biosynthetic process polygalacturonate 4-alpha-galacturonosyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: WRKY Transcription_related, Transcription regulator: PHD Golgi membrane | details |
Expression profiles
 Show details about module gene expression profiling |