TreatCFM001964's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | 0.017487175 | cazy family |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.017487175 | cazy family |
| Transcription_related, Transcription factor: C2C2-Dof | 0.017487175 | TF family |
| maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.023447049 | GO:0000463 |
| metal ion transport | 0.026640523 | GO:0030001 |
| ribosomal large subunit assembly | 0.026640523 | GO:0000027 |
| cellular transition metal ion homeostasis | 0.026640523 | GO:0046916 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000278 | AT1G06330 (6.00E-26) | Heavy metal transport/detoxification superfamily protein |
| CRO_T007112 | AT1G28310 (1.00E-30) | Dof-type zinc finger DNA-binding family protein |
| CRO_T014803 | AT1G26910 (1.00E-112) | RPL10B|ribosomal protein L10 B |
| CRO_T016259 | AT4G31140 (0) | O-Glycosyl hydrolases family 17 protein |
| CRO_T024830 | AT3G23620 (1.00E-109) | Ribosomal RNA processing Brix domain protein |
| CRO_T032502 | AT1G29240 (6.00E-08) | Protein of unknown function (DUF688) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000800 | secondary active sulfate transmembrane transporter activity sulfate transmembrane transport sucrose synthase activity sucrose metabolic process formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: C2C2-Dof Ribosome biogenesis in eukaryotes Starch and sucrose metabolism | details |
| TreatCFM000801 | Transcription_related, Transcription factor: C2C2-Dof Antigen processing and presentation metal ion transport cellular transition metal ion homeostasis sulfate transmembrane transport zinc II ion transmembrane transport | details |
| TreatCFM001006 | integral component of membrane endoplasmic reticulum-Golgi intermediate compartment nucleotide transmembrane transport purine nucleotide-sugar transmembrane transport UDP-glucose transport 3-oxo-5-alpha-steroid 4-dehydrogenase activity enoyl-[acyl-carrier-protein] reductase (NADH) activity nucleotide-sugar transmembrane transporter activity transmembrane transport spermine and spermidine degradation III Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II | details |
| TreatCFM001063 | plant sterol biosynthesis sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 3-beta-hydroxy-delta5-steroid dehydrogenase activity steroid biosynthetic process ribosomal large subunit assembly Protein processing in endoplasmic reticulum unfolded protein binding protein serine/threonine phosphatase activity response to stress | details |
| TreatCFM001168 | Antigen processing and presentation glycosaminoglycan biosynthetic process heparan sulfate proteoglycan biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:4.4.1: Unknown Function Kinase Transcription_related, Transcription factor: C2C2-Dof cellular protein metabolic process single-organism process cellular transition metal ion homeostasis metal ion transport adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | details |
| TreatCFM001299 | glycolipid translocation thiol-dependent ubiquitinyl hydrolase activity lipid transporter activity ubiquitin conjugating enzyme binding positive regulation of proteasomal ubiquitin-dependent protein catabolic process protein deubiquitination protein polyubiquitination protein ubiquitination involved in ubiquitin-dependent protein catabolic process ubiquitin-dependent protein catabolic process cytoplasm ubiquitin ligase complex Ribosome biogenesis in eukaryotes | details |
| TreatCFM001341 | salicylate glucosides biosynthesis II salvigenin biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: C2C2-Dof quercetin glucoside biosynthesis (Allium) quercetin gentiotetraside biosynthesis Starch and sucrose metabolism sucrose metabolic process aromatic compound biosynthetic process sucrose synthase activity O-methyltransferase activity spindle phragmoplast quercetin 3-O-glucosyltransferase activity quercetin 7-O-glucosyltransferase activity S-adenosylmethionine-dependent methyltransferase activity | details |
| TreatCFM001506 | receptor serine/threonine kinase binding kinase activity meristem development phosphorylation secologanin and strictosidine biosynthesis transmembrane receptor protein tyrosine kinase activity Protein_kinases_phosphatases, PPC:1.12.2: Leucine Rich Repeat Kinase II & X Transcription_related, Transcription factor: C2C2-Dof | details |
| TreatCFM001673 | Starch and sucrose metabolism adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc trehalose-phosphatase activity | details |
| TreatCFM001674 | Transcription_related, Transcription factor: Trihelix plant sterol biosynthesis sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 3-beta-hydroxy-delta5-steroid dehydrogenase activity steroid biosynthetic process ribosomal large subunit assembly Protein processing in endoplasmic reticulum unfolded protein binding protein serine/threonine phosphatase activity response to stress | details |
| TreatCFM001965 | Starch and sucrose metabolism trehalose-phosphatase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc cytoskeleton organization trehalose biosynthetic process Phenylpropanoid biosynthesis unidimensional cell growth | details |
Expression profiles
 Show details about module gene expression profiling |