TreatCFM001040's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| oleate biosynthesis I (plants) | 0.000442892 | plantCyc |
| medium-chain fatty acid-CoA ligase activity | 0.007239408 | GO:0031956 |
| mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 0.007239408 | GO:0016422 |
| MIS complex | 0.007816838 | GO:0036396 |
| nuclear speck | 0.007816838 | GO:0016607 |
| acyl-[acyl-carrier-protein] desaturase activity | 0.008041885 | GO:0045300 |
| long-chain fatty acid-CoA ligase activity | 0.008441983 | GO:0004467 |
| Phenylalanine metabolism | 0.01115372 | KEGG pathway |
| long-chain fatty acid metabolic process | 0.013532531 | GO:0001676 |
| fatty-acyl-CoA biosynthetic process | 0.013532531 | GO:0046949 |
| sporopollenin biosynthetic process | 0.013532531 | GO:0080110 |
| mRNA methylation | 0.013532531 | GO:0080009 |
| substrate-specific transmembrane transporter activity | 0.016382192 | GO:0022891 |
| Fatty acid metabolism | 0.023771296 | KEGG pathway |
| cutin biosynthesis | 0.040932256 | plantCyc |
| long-chain fatty acid activation | 0.040932256 | plantCyc |
| palmitate biosynthesis II (bacteria and plants) | 0.040932256 | plantCyc |
| phosphatidylcholine acyl editing | 0.040932256 | plantCyc |
| sporopollenin precursors biosynthesis | 0.040932256 | plantCyc |
| stearate biosynthesis II (bacteria and plants) | 0.040932256 | plantCyc |
| suberin monomers biosynthesis | 0.040932256 | plantCyc |
| chloroplast | 0.046666259 | GO:0009507 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001782 | - | - |
| CRO_T014036 | AT1G62940 (0) | ACOS5|acyl-CoA synthetase 5 |
| CRO_T015661 | AT3G03270 (0.000000009) | Adenine nucleotide alpha hydrolases-like superfamily protein |
| CRO_T021926 | AT1G16370 (1.00E-12) | ATOCT6|ORGANIC CATION/CARNITINE TRANSPORTER 6 |
| CRO_T022120 | AT5G19855 (5.00E-54) | RbcX2|homologue of cyanobacterial RbcX 2 |
| CRO_T024366 | AT3G27280 (5.00E-112) | ATPHB4|prohibitin 4 |
| CRO_T026597 | AT3G04590 (1.00E-26) | AHL14|AT-hook motif nuclear localized protein 14 |
| CRO_T033379 | AT2G43710 (2.00E-81) | FAB2|FATTY ACID BIOSYNTHESIS 2; LDW1|lesion dwarf mimic 1; SSI2|suppressor of SA insensitive 2 |
| CRO_T033827 | AT4G10760 (9.00E-77) | EMB1706|EMBRYO DEFECTIVE 1706; MTA|mRNAadenosine methylase |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000367 | Protein_kinases_phosphatases, PPC:1.9.1: CRPK1 Like Kinase (Types 1 and 2) chloroplast acetaldehyde biosynthesis I pyruvate fermentation to ethanol II organic acid transmembrane transport mRNA methylation nuclear speck MIS complex generation of precursor metabolites and energy NADH dehydrogenase (quinone) activity mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity organic acid transmembrane transporter activity alcohol dehydrogenase (NAD) activity ribosomal small subunit assembly peptidyl-tyrosine phosphorylation Glycolysis / Gluconeogenesis NF-kappa B signaling pathway mRNA binding non-membrane spanning protein tyrosine kinase activity | details |
| TreatCFM000548 | MIS complex nuclear speck Glucagon signaling pathway glucan catabolic process gametophyte development mRNA methylation DNA-templated transcription, initiation mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Ubiquitin_Proteasome_system, E3: RING Basal transcription factors cellular protein metabolic process scopolin beta-glucosidase activity | details |
| TreatCFM001607 | mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity sulfiredoxin activity nuclear speck MIS complex protein-lysine N-methyltransferase activity single-organism transport gametophyte development mRNA methylation peptidyl-lysine monomethylation chloroplast part chloroplast membrane part thylakoid cellular protein metabolic process protein transport single-organism cellular process protein transporter activity | details |
| TreatCFM002056 | formation of glycosidic bonds, GlycosylTransferases: GTnc glycerol degradation I xylulokinase activity antioxidant activity sucrose-phosphate synthase activity sucrose synthase activity sucrose biosynthesis I (from photosynthesis) sucrose biosynthesis II sucrose metabolic process carbohydrate phosphorylation Starch and sucrose metabolism | details |
| TreatCFM002116 | phosphatidylethanolamine biosynthesis I phosphatidylserine decarboxylase activity Valine, leucine and isoleucine degradation L-valine degradation I Glycerophospholipid metabolism anion transport phospholipid biosynthetic process transmembrane transporter activity aspartic-type endopeptidase activity protein catabolic process single-organism metabolic process | details |
| TreatCFM002155 | Cytochrome_P450, Cytochrome P450: CYP73A Degradation of aromatic compounds trans-cinnamate 4-monooxygenase activity phenylpropanoid biosynthesis, initial reactions phenylalanine ammonia-lyase activity lignin metabolic process protein N-glycosylation (eukaryotic, high mannose) anion transport suberin monomers biosynthesis transmembrane transporter activity cysteine-type endopeptidase activity extracellular space Lysosome integral component of membrane vacuolar membrane | details |
| TreatCFM002165 | formation of glycosidic bonds, GlycosylTransferases: GTnc RNA splicing RNA modification acetaldehyde biosynthesis I detoxification of reactive carbonyls in chloroplasts farnesylcysteine salvage pathway geraniol and geranial biosynthesis mannitol degradation II pyruvate fermentation to ethanol II traumatin and (Z)-3-hexen-1-yl acetate biosynthesis response to stress Phenylpropanoid biosynthesis | details |
| TreatCFM002174 | acetaldehyde biosynthesis I detoxification of reactive carbonyls in chloroplasts farnesylcysteine salvage pathway geraniol and geranial biosynthesis mannitol degradation II pyruvate fermentation to ethanol II traumatin and (Z)-3-hexen-1-yl acetate biosynthesis DNA replication response to stress Phenylpropanoid biosynthesis | details |
Expression profiles
 Show details about module gene expression profiling |