TreatCFM002155's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Cytochrome_P450, Cytochrome P450: CYP73A | 0.000620531 | CYP450 family |
| Degradation of aromatic compounds | 0.001447391 | KEGG pathway |
| trans-cinnamate 4-monooxygenase activity | 0.00608174 | GO:0016710 |
| phenylpropanoid biosynthesis, initial reactions | 0.006824022 | plantCyc |
| phenylalanine ammonia-lyase activity | 0.007600153 | GO:0045548 |
| lignin metabolic process | 0.012161323 | GO:0009808 |
| protein N-glycosylation (eukaryotic, high mannose) | 0.013059677 | plantCyc |
| anion transport | 0.016711444 | GO:0006820 |
| suberin monomers biosynthesis | 0.020385144 | plantCyc |
| transmembrane transporter activity | 0.025018324 | GO:0022857 |
| cysteine-type endopeptidase activity | 0.025018324 | GO:0004197 |
| extracellular space | 0.027508326 | GO:0005615 |
| Lysosome | 0.027508326 | KEGG pathway |
| integral component of membrane | 0.039938023 | GO:0016021 |
| vacuolar membrane | 0.047799536 | GO:0005774 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000851 | AT4G17550 (0) | AtG3Pp4|glycerol-3-phosphate permease 4 |
| CRO_T000894 | AT2G30490 (0) | ATC4H|CINNAMATE 4-HYDROXYLASE; C4H|cinnamate-4-hydroxylase; REF3|REDUCED EPRDERMAL FLUORESCENCE 3 |
| CRO_T018286 | AT5G45890 (3.00E-112) | SAG12|senescence-associated gene 12 |
| CRO_T024107 | AT3G46730 (9.00E-47) | NB-ARC domain-containing disease resistance protein |
| CRO_T024726 | AT5G41620 (5.00E-73) | unknown protein |
| CRO_T024900 | AT1G58390 (8.00E-55) | Disease resistance protein (CC-NBS-LRR class) family |
| CRO_T026597 | AT3G04590 (1.00E-26) | AHL14|AT-hook motif nuclear localized protein 14 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001040 | oleate biosynthesis I (plants) medium-chain fatty acid-CoA ligase activity mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity MIS complex nuclear speck acyl-[acyl-carrier-protein] desaturase activity long-chain fatty acid-CoA ligase activity Phenylalanine metabolism long-chain fatty acid metabolic process fatty-acyl-CoA biosynthetic process sporopollenin biosynthetic process mRNA methylation substrate-specific transmembrane transporter activity Fatty acid metabolism cutin biosynthesis long-chain fatty acid activation palmitate biosynthesis II (bacteria and plants) phosphatidylcholine acyl editing sporopollenin precursors biosynthesis stearate biosynthesis II (bacteria and plants) suberin monomers biosynthesis chloroplast | details |
| TreatCFM001919 | Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family acetaldehyde biosynthesis I detoxification of reactive carbonyls in chloroplasts farnesylcysteine salvage pathway geraniol and geranial biosynthesis mannitol degradation II pyruvate fermentation to ethanol II traumatin and (Z)-3-hexen-1-yl acetate biosynthesis Transcription_related, Transcription factor: bHLH Phenylpropanoid biosynthesis | details |
| TreatCFM002030 | nuclear-transcribed mRNA catabolic process large ribosomal subunit rRNA binding acetaldehyde biosynthesis I detoxification of reactive carbonyls in chloroplasts farnesylcysteine salvage pathway geraniol and geranial biosynthesis mannitol degradation II pyruvate fermentation to ethanol II traumatin and (Z)-3-hexen-1-yl acetate biosynthesis ribosomal large subunit assembly cytoplasmic translation rRNA processing preribosome, large subunit precursor Phenylpropanoid biosynthesis cytosolic large ribosomal subunit nucleolus Spliceosome Transcription_related, Transcription factor: ERF Transcription_related, Transcription factor: MYB | details |
| TreatCFM002056 | formation of glycosidic bonds, GlycosylTransferases: GTnc glycerol degradation I xylulokinase activity antioxidant activity sucrose-phosphate synthase activity sucrose synthase activity sucrose biosynthesis I (from photosynthesis) sucrose biosynthesis II sucrose metabolic process carbohydrate phosphorylation Starch and sucrose metabolism | details |
| TreatCFM002116 | phosphatidylethanolamine biosynthesis I phosphatidylserine decarboxylase activity Valine, leucine and isoleucine degradation L-valine degradation I Glycerophospholipid metabolism anion transport phospholipid biosynthetic process transmembrane transporter activity aspartic-type endopeptidase activity protein catabolic process single-organism metabolic process | details |
| TreatCFM002165 | formation of glycosidic bonds, GlycosylTransferases: GTnc RNA splicing RNA modification acetaldehyde biosynthesis I detoxification of reactive carbonyls in chloroplasts farnesylcysteine salvage pathway geraniol and geranial biosynthesis mannitol degradation II pyruvate fermentation to ethanol II traumatin and (Z)-3-hexen-1-yl acetate biosynthesis response to stress Phenylpropanoid biosynthesis | details |
| TreatCFM002171 | protein N-glycosylation (eukaryotic, high mannose) ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor regulation of cell cycle deoxyribonucleoside diphosphate metabolic process deoxyribonucleotide biosynthetic process pollen tube development embryo sac development cysteine-type endopeptidase activity protein serine/threonine phosphatase activity Purine metabolism ribonucleoside-diphosphate reductase complex rRNA binding extracellular space Lysosome pollen development formation of glycosidic bonds, GlycosylTransferases: GTnc multicellular organism development proteolysis involved in cellular protein catabolic process | details |
| TreatCFM002174 | acetaldehyde biosynthesis I detoxification of reactive carbonyls in chloroplasts farnesylcysteine salvage pathway geraniol and geranial biosynthesis mannitol degradation II pyruvate fermentation to ethanol II traumatin and (Z)-3-hexen-1-yl acetate biosynthesis DNA replication response to stress Phenylpropanoid biosynthesis | details |
| TreatCFM002177 | S-adenosyl-L-methionine cycle II 2'-deoxymugineic acid phytosiderophore biosynthesis L-methionine degradation I (to L-homocysteine) L-methionine salvage cycle I (bacteria and plants) L-methionine salvage cycle II (plants) S-adenosyl-L-methionine biosynthesis S-adenosylmethionine biosynthetic process one-carbon metabolic process formation of glycosidic bonds, GlycosylTransferases: GTnc glycogen (starch) synthase activity methionine adenosyltransferase activity starch binding cytoplasmic translation ethylene biosynthesis I (plants) starch biosynthesis Transcription_related, Transcription regulator: SNF2 metal ion binding cytosolic large ribosomal subunit Biosynthesis of amino acids | details |
Expression profiles
 Show details about module gene expression profiling |