TreatCFM002056's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.003541648 | cazy family |
| glycerol degradation I | 0.003900421 | plantCyc |
| xylulokinase activity | 0.004827128 | GO:0004856 |
| antioxidant activity | 0.004827128 | GO:0016209 |
| sucrose-phosphate synthase activity | 0.006434743 | GO:0046524 |
| sucrose synthase activity | 0.009647837 | GO:0016157 |
| sucrose biosynthesis I (from photosynthesis) | 0.009732338 | plantCyc |
| sucrose biosynthesis II | 0.009732338 | plantCyc |
| sucrose metabolic process | 0.021226183 | GO:0005985 |
| carbohydrate phosphorylation | 0.021226183 | GO:0046835 |
| Starch and sucrose metabolism | 0.023182294 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004970 | AT2G38780 (6.00E-52) | unknown protein |
| CRO_T011732 | AT2G21370 (4.00E-164) | XK-1|xylulose kinase-1; XK1|XYLULOSE KINASE 1 |
| CRO_T014467 | AT1G04920 (0) | ATSPS3F|sucrose phosphate synthase 3F |
| CRO_T020249 | AT2G39190 (7.00E-98) | ATATH8|Protein kinase superfamily protein |
| CRO_T024184 | AT1G21350 (1.00E-58) | Thioredoxin superfamily protein |
| CRO_T026597 | AT3G04590 (1.00E-26) | AHL14|AT-hook motif nuclear localized protein 14 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001040 | oleate biosynthesis I (plants) medium-chain fatty acid-CoA ligase activity mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity MIS complex nuclear speck acyl-[acyl-carrier-protein] desaturase activity long-chain fatty acid-CoA ligase activity Phenylalanine metabolism long-chain fatty acid metabolic process fatty-acyl-CoA biosynthetic process sporopollenin biosynthetic process mRNA methylation substrate-specific transmembrane transporter activity Fatty acid metabolism cutin biosynthesis long-chain fatty acid activation palmitate biosynthesis II (bacteria and plants) phosphatidylcholine acyl editing sporopollenin precursors biosynthesis stearate biosynthesis II (bacteria and plants) suberin monomers biosynthesis chloroplast | details |
| TreatCFM001439 | Alanine, aspartate and glutamate metabolism nuclear-transcribed mRNA catabolic process formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Glycerolipid metabolism hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds large ribosomal subunit rRNA binding nitrogen compound metabolic process glycosyl compound metabolic process ribosomal large subunit assembly cytoplasmic translation rRNA processing beta-glucosidase activity | details |
| TreatCFM001926 | [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity protein kinase activity Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family Transcription_related, Transcription regulator: SET chloroplast | details |
| TreatCFM002045 | Transcription_related, Transcription regulator: Rcd1-like protein kinase activity sucrose-phosphate synthase activity sucrose biosynthesis I (from photosynthesis) sucrose biosynthesis II sucrose synthase activity CCR4-NOT core complex negative regulation of translation sucrose metabolic process formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family cytoplasmic mRNA processing body RNA degradation Starch and sucrose metabolism | details |
| TreatCFM002046 | protein kinase activity Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family acetaldehyde biosynthesis I detoxification of reactive carbonyls in chloroplasts farnesylcysteine salvage pathway geraniol and geranial biosynthesis mannitol degradation II pyruvate fermentation to ethanol II traumatin and (Z)-3-hexen-1-yl acetate biosynthesis Phenylpropanoid biosynthesis | details |
| TreatCFM002155 | Cytochrome_P450, Cytochrome P450: CYP73A Degradation of aromatic compounds trans-cinnamate 4-monooxygenase activity phenylpropanoid biosynthesis, initial reactions phenylalanine ammonia-lyase activity lignin metabolic process protein N-glycosylation (eukaryotic, high mannose) anion transport suberin monomers biosynthesis transmembrane transporter activity cysteine-type endopeptidase activity extracellular space Lysosome integral component of membrane vacuolar membrane | details |
Expression profiles
 Show details about module gene expression profiling |