TreatCFM001091's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| malate transport | 1.21E-05 | GO:0015743 |
| deoxyribonucleotide biosynthetic process | 1.21E-05 | GO:0009263 |
| ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor | 2.30E-05 | GO:0004748 |
| ribonucleoside-diphosphate reductase complex | 2.42E-05 | GO:0005971 |
| Purine metabolism | 0.001260853 | KEGG pathway |
| L-methionine biosynthetic process from S-adenosylmethionine | 0.0030406 | GO:0019284 |
| S-methyl-5-thio-α-D-ribose 1-phosphate degradation | 0.003099354 | plantCyc |
| L-methionine biosynthetic process from methylthioadenosine | 0.007596784 | GO:0019509 |
| S-methyl-5-thioribose-1-phosphate isomerase activity | 0.008262193 | GO:0046523 |
| Cysteine and methionine metabolism | 0.012986168 | KEGG pathway |
| malate transmembrane transporter activity | 0.014149953 | GO:0015140 |
| DNA replication | 0.027867093 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004436 | AT3G18440 (6.00E-18) | ALMT9|aluminum-activated malate transporter 9 |
| CRO_T004437 | AT3G18440 (2.00E-111) | ALMT9|aluminum-activated malate transporter 9 |
| CRO_T013839 | AT1G77630 (1.00E-138) | LYM3|lysin-motif (LysM) domain protein 3; LYP3|LysM-containing receptor protein 3 |
| CRO_T015801 | AT2G21790 (4.00E-147) | ATRNR1|RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1; CLS8|CRINKLY LEAVES 8; DPD2|defective in pollen organelle DNA degradation 2; R1|RIBONUCLEOTIDE REDUCTASE 1 |
| CRO_T019731 | - | - |
| CRO_T022854 | AT2G21790 (5.00E-63) | ATRNR1|RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1; CLS8|CRINKLY LEAVES 8; DPD2|defective in pollen organelle DNA degradation 2; R1|RIBONUCLEOTIDE REDUCTASE 1 |
| CRO_T030889 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000118 | Ubiquitin_Proteasome_system, DUB: JAMM formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM000393 | malate transport alpha-Linolenic acid metabolism NADPH dehydrogenase activity 12-oxophytodienoate reductase activity oxylipin biosynthetic process jasmonic acid biosynthetic process jasmonic acid biosynthesis malate transmembrane transporter activity FMN binding plant-type vacuole membrane integral component of membrane Peroxisome fatty acid biosynthetic process | details |
| TreatCFM001186 | formation of glycosidic bonds, GlycosylTransferases: GTnc Various types of N-glycan biosynthesis Lewis a epitope biosynthetic process L-methionine biosynthetic process from S-adenosylmethionine fucosylation S-methyl-5-thio-α-D-ribose 1-phosphate degradation adenosine ribonucleotides de novo biosynthesis L-methionine biosynthetic process from methylthioadenosine fucosyltransferase activity ribosomal small subunit assembly S-methyl-5-thioribose-1-phosphate isomerase activity plant-type vacuole Golgi cisterna membrane protein glycosylation Ubiquitin_Proteasome_system, E3: U-box Cysteine and methionine metabolism | details |
| TreatCFM001417 | Transcription_related, Transcription regulator: GNAT Ctf18 RFC-like complex ribonucleoside-diphosphate reductase complex chromosome, centromeric region chromatin maintenance of mitotic sister chromatid cohesion protein acetyltransferase complex deoxyribonucleotide biosynthetic process cellular response to nitrogen starvation regulation of DNA replication DNA clamp loader activity ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor nucleoplasm peptide alpha-N-acetyltransferase activity Apelin signaling pathway autophagy N-terminal protein amino acid acetylation DNA replication protein binding Purine metabolism | details |
| TreatCFM001815 | malate transport formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: DBP benzoyl-CoA biosynthesis glycoprotein 2-beta-D-xylosyltransferase activity Fatty acid metabolism fatty acid β-oxidation II (peroxisome) benzoate biosynthesis I (CoA-dependent, β-oxidative) malate transmembrane transporter activity O-acetyltransferase activity transferase activity, transferring acyl groups other than amino-acyl groups protein serine/threonine phosphatase activity cell wall organization or biogenesis protein dephosphorylation | details |
| TreatCFM001942 | formation of glycosidic bonds, GlycosylTransferases: GTnc Various types of N-glycan biosynthesis adenosine ribonucleotides de novo biosynthesis Lewis a epitope biosynthetic process fucosylation regulation of root morphogenesis deoxyribonucleotide biosynthetic process Golgi cisterna membrane fucosyltransferase activity ribonucleoside-diphosphate reductase complex proton-transporting ATP synthase complex, catalytic core F(1) ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor protein glycosylation ATP synthesis coupled proton transport cell wall organization or biogenesis DNA replication proton-transporting ATP synthase activity, rotational mechanism proton-transporting ATPase activity, rotational mechanism O-acetyltransferase activity | details |
Expression profiles
 Show details about module gene expression profiling |