TreatCFM001942's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.000531915 | cazy family |
| Various types of N-glycan biosynthesis | 0.003900421 | KEGG pathway |
| adenosine ribonucleotides de novo biosynthesis | 0.005838109 | plantCyc |
| Lewis a epitope biosynthetic process | 0.006018637 | GO:0010493 |
| fucosylation | 0.006018637 | GO:0036065 |
| regulation of root morphogenesis | 0.006018637 | GO:2000067 |
| deoxyribonucleotide biosynthetic process | 0.010152697 | GO:0009263 |
| Golgi cisterna membrane | 0.010424761 | GO:0032580 |
| fucosyltransferase activity | 0.011565349 | GO:0008417 |
| ribonucleoside-diphosphate reductase complex | 0.011723524 | GO:0005971 |
| proton-transporting ATP synthase complex, catalytic core F(1) | 0.01908666 | GO:0045261 |
| ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor | 0.019265615 | GO:0004748 |
| protein glycosylation | 0.025874952 | GO:0006486 |
| ATP synthesis coupled proton transport | 0.025874952 | GO:0015986 |
| cell wall organization or biogenesis | 0.025874952 | GO:0071554 |
| DNA replication | 0.025874952 | KEGG pathway |
| proton-transporting ATP synthase activity, rotational mechanism | 0.027689243 | GO:0046933 |
| proton-transporting ATPase activity, rotational mechanism | 0.027689243 | GO:0046961 |
| O-acetyltransferase activity | 0.027689243 | GO:0016413 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001541 | AT4G04640 (6.00E-145) | ATPC1|ATPase, F1 complex, gamma subunit protein |
| CRO_T003761 | AT3G20890 (3.00E-78) | RNA-binding (RRM/RBD/RNP motifs) family protein |
| CRO_T010096 | AT1G71990 (9.00E-170) | ATFT4|ARABIDOPSIS FUCOSYLTRANSFERASE 4; FUT13|fucosyltransferase 13 |
| CRO_T015801 | AT2G21790 (4.00E-147) | ATRNR1|RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1; CLS8|CRINKLY LEAVES 8; DPD2|defective in pollen organelle DNA degradation 2; R1|RIBONUCLEOTIDE REDUCTASE 1 |
| CRO_T024416 | AT5G15890 (5.00E-109) | TBL21|TRICHOME BIREFRINGENCE-LIKE 21 |
| CRO_T027641 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000047 | Golgi cisterna membrane Various types of N-glycan biosynthesis fucosylation Lewis a epitope biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc fucosyltransferase activity | details |
| TreatCFM000096 | Protein_kinases_phosphatases, PPC:1.4.1: Crinkly 4 Like Kinase DNA ligation involved in DNA repair double-strand break repair via nonhomologous end joining lagging strand elongation protein ADP-ribosylation nucleic acid binding hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances NAD+ ADP-ribosyltransferase activity DNA ligase (ATP) activity adenosine ribonucleotides de novo biosynthesis Base excision repair NF-kappa B signaling pathway | details |
| TreatCFM000208 | adenosine ribonucleotides de novo biosynthesis Golgi apparatus cell division site cell plate plant-type vacuole nuclear envelope cytokinesis by cell plate formation nucleic acid binding O-acetyltransferase activity cell wall organization or biogenesis | details |
| TreatCFM000222 | fucosyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Various types of N-glycan biosynthesis Lewis a epitope biosynthetic process fucosylation Golgi cisterna membrane protein glycosylation | details |
| TreatCFM000852 | fucosyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Various types of N-glycan biosynthesis fucosylation Lewis a epitope biosynthetic process Golgi cisterna membrane protein glycosylation | details |
| TreatCFM000869 | fucosyltransferase activity Various types of N-glycan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc Lewis a epitope biosynthetic process fucosylation Ubiquitin_Proteasome_system, DUB: JAMM COP9 signalosome Golgi cisterna membrane cullin deneddylation protein glycosylation | details |
| TreatCFM001091 | malate transport deoxyribonucleotide biosynthetic process ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor ribonucleoside-diphosphate reductase complex Purine metabolism L-methionine biosynthetic process from S-adenosylmethionine S-methyl-5-thio-α-D-ribose 1-phosphate degradation L-methionine biosynthetic process from methylthioadenosine S-methyl-5-thioribose-1-phosphate isomerase activity Cysteine and methionine metabolism malate transmembrane transporter activity DNA replication | details |
| TreatCFM001186 | formation of glycosidic bonds, GlycosylTransferases: GTnc Various types of N-glycan biosynthesis Lewis a epitope biosynthetic process L-methionine biosynthetic process from S-adenosylmethionine fucosylation S-methyl-5-thio-α-D-ribose 1-phosphate degradation adenosine ribonucleotides de novo biosynthesis L-methionine biosynthetic process from methylthioadenosine fucosyltransferase activity ribosomal small subunit assembly S-methyl-5-thioribose-1-phosphate isomerase activity plant-type vacuole Golgi cisterna membrane protein glycosylation Ubiquitin_Proteasome_system, E3: U-box Cysteine and methionine metabolism | details |
| TreatCFM001242 | DNA replication, synthesis of RNA primer primosome complex DNA primase activity Cell cycle 4 iron, 4 sulfur cluster binding | details |
| TreatCFM001305 | Ubiquitin_Proteasome_system, DUB: JAMM regulation of root morphogenesis adenosine ribonucleotides de novo biosynthesis actin filament depolymerization response to hormone actin cytoskeleton ATP synthesis coupled proton transport proton-transporting ATP synthase complex, catalytic core F(1) AMPK signaling pathway Regulation of actin cytoskeleton proton-transporting ATP synthase activity, rotational mechanism proton-transporting ATPase activity, rotational mechanism actin binding | details |
| TreatCFM001417 | Transcription_related, Transcription regulator: GNAT Ctf18 RFC-like complex ribonucleoside-diphosphate reductase complex chromosome, centromeric region chromatin maintenance of mitotic sister chromatid cohesion protein acetyltransferase complex deoxyribonucleotide biosynthetic process cellular response to nitrogen starvation regulation of DNA replication DNA clamp loader activity ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor nucleoplasm peptide alpha-N-acetyltransferase activity Apelin signaling pathway autophagy N-terminal protein amino acid acetylation DNA replication protein binding Purine metabolism | details |
| TreatCFM002133 | Various types of N-glycan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc Lewis a epitope biosynthetic process fucosylation xylogalacturonan biosynthesis Insulin signaling pathway Golgi cisterna membrane fucosyltransferase activity exocyst protein glycosylation exocytosis Ubiquitin_Proteasome_system, E3: U-box | details |
Expression profiles
 Show details about module gene expression profiling |