TreatCFM001186's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.002127408 | cazy family |
| Various types of N-glycan biosynthesis | 0.007878474 | KEGG pathway |
| Lewis a epitope biosynthetic process | 0.008023663 | GO:0010493 |
| L-methionine biosynthetic process from S-adenosylmethionine | 0.008023663 | GO:0019284 |
| fucosylation | 0.008023663 | GO:0036065 |
| S-methyl-5-thio-α-D-ribose 1-phosphate degradation | 0.010623846 | plantCyc |
| adenosine ribonucleotides de novo biosynthesis | 0.011664498 | plantCyc |
| L-methionine biosynthetic process from methylthioadenosine | 0.015035034 | GO:0019509 |
| fucosyltransferase activity | 0.020770369 | GO:0008417 |
| ribosomal small subunit assembly | 0.022831989 | GO:0000028 |
| S-methyl-5-thioribose-1-phosphate isomerase activity | 0.024222072 | GO:0046523 |
| plant-type vacuole | 0.031392482 | GO:0000325 |
| Golgi cisterna membrane | 0.031392482 | GO:0032580 |
| protein glycosylation | 0.032001848 | GO:0006486 |
| Ubiquitin_Proteasome_system, E3: U-box | 0.037879992 | ubs family |
| Cysteine and methionine metabolism | 0.041199768 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003761 | AT3G20890 (3.00E-78) | RNA-binding (RRM/RBD/RNP motifs) family protein |
| CRO_T010096 | AT1G71990 (9.00E-170) | ATFT4|ARABIDOPSIS FUCOSYLTRANSFERASE 4; FUT13|fucosyltransferase 13 |
| CRO_T011527 | ATCG00900 (7.00E-33) | RPS7|CHLOROPLAST RIBOSOMAL PROTEIN S7 |
| CRO_T012370 | AT5G19970 (1.00E-67) | unknown protein |
| CRO_T013595 | AT3G58730 (1.00E-113) | vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD) |
| CRO_T019731 | - | - |
| CRO_T023361 | AT2G23140 (0) | PUB4|plant U-box 4 |
| CRO_T025619 | AT4G31270 (5.00E-37) | sequence-specific DNA binding transcription factors |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000047 | Golgi cisterna membrane Various types of N-glycan biosynthesis fucosylation Lewis a epitope biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc fucosyltransferase activity | details |
| TreatCFM000096 | Protein_kinases_phosphatases, PPC:1.4.1: Crinkly 4 Like Kinase DNA ligation involved in DNA repair double-strand break repair via nonhomologous end joining lagging strand elongation protein ADP-ribosylation nucleic acid binding hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances NAD+ ADP-ribosyltransferase activity DNA ligase (ATP) activity adenosine ribonucleotides de novo biosynthesis Base excision repair NF-kappa B signaling pathway | details |
| TreatCFM000118 | Ubiquitin_Proteasome_system, DUB: JAMM formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM000208 | adenosine ribonucleotides de novo biosynthesis Golgi apparatus cell division site cell plate plant-type vacuole nuclear envelope cytokinesis by cell plate formation nucleic acid binding O-acetyltransferase activity cell wall organization or biogenesis | details |
| TreatCFM000222 | fucosyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Various types of N-glycan biosynthesis Lewis a epitope biosynthetic process fucosylation Golgi cisterna membrane protein glycosylation | details |
| TreatCFM000541 | formation of glycosidic bonds, GlycosylTransferases: GTnc protein N-glycosylation (eukaryotic, high mannose) ribosomal small subunit assembly mRNA binding transferase activity, transferring hexosyl groups N-Glycan biosynthesis rRNA binding | details |
| TreatCFM000852 | fucosyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Various types of N-glycan biosynthesis fucosylation Lewis a epitope biosynthetic process Golgi cisterna membrane protein glycosylation | details |
| TreatCFM000869 | fucosyltransferase activity Various types of N-glycan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc Lewis a epitope biosynthetic process fucosylation Ubiquitin_Proteasome_system, DUB: JAMM COP9 signalosome Golgi cisterna membrane cullin deneddylation protein glycosylation | details |
| TreatCFM000904 | peroxisomal importomer complex integral component of peroxisomal membrane D-myo-inositol-5-phosphate metabolism phytate degradation I protein C-terminus binding protein monoubiquitination embryonic morphogenesis protein import into peroxisome matrix fatty acid beta-oxidation peptidyl-tyrosine dephosphorylation Glycolysis / Gluconeogenesis Inositol phosphate metabolism Peroxisome protein tyrosine phosphatase activity acid phosphatase activity dephosphorylation | details |
| TreatCFM001091 | malate transport deoxyribonucleotide biosynthetic process ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor ribonucleoside-diphosphate reductase complex Purine metabolism L-methionine biosynthetic process from S-adenosylmethionine S-methyl-5-thio-α-D-ribose 1-phosphate degradation L-methionine biosynthetic process from methylthioadenosine S-methyl-5-thioribose-1-phosphate isomerase activity Cysteine and methionine metabolism malate transmembrane transporter activity DNA replication | details |
| TreatCFM001185 | Insulin signaling pathway xylogalacturonan biosynthesis histone acetyltransferase activity exocyst histone acetylation exocytosis formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: C2H2 Ubiquitin_Proteasome_system, E3: U-box | details |
| TreatCFM001305 | Ubiquitin_Proteasome_system, DUB: JAMM regulation of root morphogenesis adenosine ribonucleotides de novo biosynthesis actin filament depolymerization response to hormone actin cytoskeleton ATP synthesis coupled proton transport proton-transporting ATP synthase complex, catalytic core F(1) AMPK signaling pathway Regulation of actin cytoskeleton proton-transporting ATP synthase activity, rotational mechanism proton-transporting ATPase activity, rotational mechanism actin binding | details |
| TreatCFM001387 | L-mimosine synthase activity beta-pyrazolylalanine synthase activity pyrazolylalanine synthase activity cysteine synthase activity 3-phosphoinositide biosynthesis adenosine ribonucleotides de novo biosynthesis L-cysteine biosynthesis I Ubiquitin_Proteasome_system, E3: U-box Autophagy - animal cellular amino acid biosynthetic process cysteine biosynthetic process from serine plant-type vacuole regulation of cellular process intracellular ribonucleoprotein complex viral nucleocapsid | details |
| TreatCFM001942 | formation of glycosidic bonds, GlycosylTransferases: GTnc Various types of N-glycan biosynthesis adenosine ribonucleotides de novo biosynthesis Lewis a epitope biosynthetic process fucosylation regulation of root morphogenesis deoxyribonucleotide biosynthetic process Golgi cisterna membrane fucosyltransferase activity ribonucleoside-diphosphate reductase complex proton-transporting ATP synthase complex, catalytic core F(1) ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor protein glycosylation ATP synthesis coupled proton transport cell wall organization or biogenesis DNA replication proton-transporting ATP synthase activity, rotational mechanism proton-transporting ATPase activity, rotational mechanism O-acetyltransferase activity | details |
| TreatCFM002133 | Various types of N-glycan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc Lewis a epitope biosynthetic process fucosylation xylogalacturonan biosynthesis Insulin signaling pathway Golgi cisterna membrane fucosyltransferase activity exocyst protein glycosylation exocytosis Ubiquitin_Proteasome_system, E3: U-box | details |
Expression profiles
 Show details about module gene expression profiling |