TreatCFM001417's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription regulator: GNAT | 0.004602101 | TF family |
| Ctf18 RFC-like complex | 0.005213151 | GO:0031390 |
| ribonucleoside-diphosphate reductase complex | 0.006512588 | GO:0005971 |
| chromosome, centromeric region | 0.006512588 | GO:0000775 |
| chromatin | 0.006512588 | GO:0000785 |
| maintenance of mitotic sister chromatid cohesion | 0.007710803 | GO:0034088 |
| protein acetyltransferase complex | 0.007812219 | GO:0031248 |
| deoxyribonucleotide biosynthetic process | 0.008670167 | GO:0009263 |
| cellular response to nitrogen starvation | 0.008670167 | GO:0006995 |
| regulation of DNA replication | 0.008670167 | GO:0006275 |
| DNA clamp loader activity | 0.010115924 | GO:0003689 |
| ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor | 0.010115924 | GO:0004748 |
| nucleoplasm | 0.011275148 | GO:0005654 |
| peptide alpha-N-acetyltransferase activity | 0.012131936 | GO:0004596 |
| Apelin signaling pathway | 0.012215977 | KEGG pathway |
| autophagy | 0.012324528 | GO:0006914 |
| N-terminal protein amino acid acetylation | 0.012834257 | GO:0006474 |
| DNA replication | 0.025253264 | KEGG pathway |
| protein binding | 0.03424708 | GO:0005515 |
| Purine metabolism | 0.039983053 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T007964 | AT2G39000 (2.00E-51) | Acyl-CoA N-acyltransferases (NAT) superfamily protein |
| CRO_T009213 | AT5G52910 (0) | ATIM|TIMELESS |
| CRO_T015801 | AT2G21790 (4.00E-147) | ATRNR1|RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1; CLS8|CRINKLY LEAVES 8; DPD2|defective in pollen organelle DNA degradation 2; R1|RIBONUCLEOTIDE REDUCTASE 1 |
| CRO_T016067 | AT3G15580 (3.00E-43) | APG8H|AUTOPHAGY 8H; ATG8I|AUTOPHAGY 8I |
| CRO_T016435 | AT2G44580 (2.00E-118) | zinc ion binding |
| CRO_T019399 | AT1G34770 (6.00E-42) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000094 | Transcription_related, Transcription regulator: MED6 D-myo-inositol (1,4,5)-trisphosphate degradation ethylene biosynthesis I (plants) L-methionine salvage cycle II (plants) | details |
| TreatCFM001091 | malate transport deoxyribonucleotide biosynthetic process ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor ribonucleoside-diphosphate reductase complex Purine metabolism L-methionine biosynthetic process from S-adenosylmethionine S-methyl-5-thio-α-D-ribose 1-phosphate degradation L-methionine biosynthetic process from methylthioadenosine S-methyl-5-thioribose-1-phosphate isomerase activity Cysteine and methionine metabolism malate transmembrane transporter activity DNA replication | details |
| TreatCFM001137 | Apelin signaling pathway Transcription_related, Transcription regulator: GNAT cellular response to nitrogen starvation N-terminal protein amino acid acetylation autophagy protein acetyltransferase complex intracellular part ATP-dependent helicase activity peptide alpha-N-acetyltransferase activity | details |
| TreatCFM001378 | protein import into nucleus, docking protein import into nucleus, translocation cellular response to nitrogen starvation ribosomal protein import into nucleus Mismatch repair clathrin vesicle coat mismatch repair complex NLS-bearing protein import into nucleus autophagy nuclear membrane nuclear periphery Transcription_related, Transcription factor: MYB Apelin signaling pathway Phenylpropanoid biosynthesis very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II Fatty acid metabolism Ran GTPase binding nuclear localization sequence binding mismatched DNA binding | details |
| TreatCFM001418 | acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity Transcription_related, Transcription factor: CPP serine-type peptidase activity Transcription_related, Transcription factor: C2H2 Transcription_related, Transcription factor: MYB proteolysis | details |
| TreatCFM001942 | formation of glycosidic bonds, GlycosylTransferases: GTnc Various types of N-glycan biosynthesis adenosine ribonucleotides de novo biosynthesis Lewis a epitope biosynthetic process fucosylation regulation of root morphogenesis deoxyribonucleotide biosynthetic process Golgi cisterna membrane fucosyltransferase activity ribonucleoside-diphosphate reductase complex proton-transporting ATP synthase complex, catalytic core F(1) ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor protein glycosylation ATP synthesis coupled proton transport cell wall organization or biogenesis DNA replication proton-transporting ATP synthase activity, rotational mechanism proton-transporting ATPase activity, rotational mechanism O-acetyltransferase activity | details |
Expression profiles
 Show details about module gene expression profiling |