TreatCFM001323's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| L-asparagine degradation I | 0.003190782 | plantCyc |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.003541648 | cazy family |
| superpathway of aspartate and asparagine biosynthesis | 0.004516602 | plantCyc |
| early endosome membrane | 0.011565349 | GO:0031901 |
| Apelin signaling pathway | 0.012215977 | KEGG pathway |
| asparaginase activity | 0.012871389 | GO:0004067 |
| autophagy | 0.018216961 | GO:0006914 |
| cellular response to nitrogen starvation | 0.018216961 | GO:0006995 |
| RNA splicing | 0.018216961 | GO:0008380 |
| exocytosis | 0.025034386 | GO:0006887 |
| vesicle fusion | 0.025034386 | GO:0006906 |
| protein transport | 0.026724413 | GO:0015031 |
| response to abscisic acid | 0.030201047 | GO:0009737 |
| SNARE binding | 0.031292983 | GO:0000149 |
| SNAP receptor activity | 0.031292983 | GO:0005484 |
| ribosome binding | 0.031292983 | GO:0043022 |
| Spliceosome | 0.04413962 | KEGG pathway |
| chloroplast | 0.044626643 | GO:0009507 |
| SNARE complex | 0.049983386 | GO:0031201 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T007283 | AT5G57960 (0) | GTP-binding protein, HflX |
| CRO_T016444 | AT4G21980 (5.00E-39) | APG8A|AUTOPHAGY 8A; ATG8A|AUTOPHAGY-RELATED 8A |
| CRO_T017309 | AT3G16010 (6.00E-42) | Pentatricopeptide repeat (PPR-like) superfamily protein |
| CRO_T017989 | AT5G08100 (1.00E-108) | ASPGA1|asparaginase A1 |
| CRO_T025801 | AT1G04760 (2.00E-102) | ATVAMP726|vesicle-associated membrane protein 726 |
| CRO_T027130 | AT1G17370 (7.00E-27) | UBP1B|oligouridylate binding protein 1B |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001079 | calcium-dependent cysteine-type endopeptidase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.3.1: Receptor-like protein kinase L-ornithine transmembrane transporter activity asparaginase activity L-histidine transmembrane transporter activity arginine transmembrane transporter activity sedoheptulose-bisphosphatase activity L-lysine transmembrane transporter activity early endosome membrane L-histidine transmembrane transport L-arginine import L-ornithine transmembrane transport arginine transmembrane transport L-lysine transmembrane transport proline biosynthetic process ascorbate glutathione cycle fructose 2,6-bisphosphate biosynthesis L-ascorbate degradation V L-asparagine degradation I ornithine-citrulline shuttle superpathway of aspartate and asparagine biosynthesis seed maturation proteolysis Ascorbate and aldarate metabolism sucrose biosynthesis I (from photosynthesis) Calvin-Benson-Bassham cycle RNA splicing seed germination Endocytosis | details |
| TreatCFM001184 | ornithine-citrulline shuttle Protein_kinases_phosphatases, PPC:1.3.1: Receptor-like protein kinase 26,27-dehydrozymosterol metabolism L-arginine biosynthesis I (via L-ornithine) L-ascorbate degradation V UMP biosynthesis I urea cycle Ascorbate and aldarate metabolism Pyrimidine metabolism arginine transmembrane transporter activity L-histidine transmembrane transporter activity L-ornithine transmembrane transporter activity early endosome membrane ascorbate glutathione cycle L-arginine biosynthesis II (acetyl cycle) L-glutamine degradation I L-lysine transmembrane transporter activity proline biosynthetic process L-arginine import L-lysine transmembrane transport arginine transmembrane transport L-ornithine transmembrane transport L-histidine transmembrane transport potassium ion transport seed maturation plant sterol biosynthesis nitrogen compound metabolic process seed germination solute:proton antiporter activity | details |
| TreatCFM001393 | carbohydrate binding glucan 1,3-alpha-glucosidase activity aldose 1-epimerase activity L-amino acid transmembrane transporter activity solute:proton antiporter activity negative regulation of biological process L-alpha-amino acid transmembrane transport hexose metabolic process L-amino acid transport MicroRNAs in cancer early endosome membrane potassium ion transport Glycolysis / Gluconeogenesis N-Glycan biosynthesis SNARE binding SNAP receptor activity cellular macromolecule metabolic process antiporter activity primary metabolic process exocytosis vesicle fusion | details |
| TreatCFM001962 | L-alpha-amino acid transmembrane transport L-amino acid transport hexose metabolic process MicroRNAs in cancer Thyroid hormone signaling pathway Glycolysis / Gluconeogenesis aldose 1-epimerase activity early endosome membrane L-amino acid transmembrane transporter activity Transcription_related, Transcription factor: MYB vesicle fusion exocytosis protein transport SNAP receptor activity SNARE binding antiporter activity carbohydrate binding | details |
| TreatCFM002100 | mitochondrion arginine transmembrane transporter activity L-ornithine transmembrane transporter activity proline-tRNA ligase activity L-histidine transmembrane transporter activity auxin binding auxin receptor activity inositol hexakisphosphate binding ornithine-citrulline shuttle EKC/KEOPS complex L-lysine transmembrane transporter activity tRNA threonylcarbamoyladenosine modification prolyl-tRNA aminoacylation regulation of photosynthesis L-ornithine transmembrane transport L-histidine transmembrane transport arginine transmembrane transport L-arginine import adenosine ribonucleotides de novo biosynthesis L-lysine transmembrane transport proline biosynthetic process pollen maturation stamen development formation of glycosidic bonds, GlycosylTransferases: GTnc plant ovule development mitochondrial proton-transporting ATP synthase complex lateral root formation RNA splicing seed development SCF ubiquitin ligase complex embryo sac development cobalt ion binding ribosome binding chloroplast proton-transporting ATP synthase activity, rotational mechanism ATP synthesis coupled proton transport auxin-activated signaling pathway | details |
Expression profiles
 Show details about module gene expression profiling |