TreatCFM001079's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| calcium-dependent cysteine-type endopeptidase activity | 0.00011785 | GO:0004198 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.009724439 | cazy family |
| Protein_kinases_phosphatases, PPC:1.3.1: Receptor-like protein kinase | 0.009724439 | kinase family |
| L-ornithine transmembrane transporter activity | 0.012665706 | GO:0000064 |
| asparaginase activity | 0.012665706 | GO:0004067 |
| L-histidine transmembrane transporter activity | 0.012665706 | GO:0005290 |
| arginine transmembrane transporter activity | 0.012665706 | GO:0015181 |
| sedoheptulose-bisphosphatase activity | 0.012665706 | GO:0050278 |
| L-lysine transmembrane transporter activity | 0.013568395 | GO:0015189 |
| early endosome membrane | 0.021196875 | GO:0031901 |
| L-histidine transmembrane transport | 0.023372287 | GO:0089709 |
| L-arginine import | 0.023372287 | GO:0043091 |
| L-ornithine transmembrane transport | 0.023372287 | GO:1903352 |
| arginine transmembrane transport | 0.023372287 | GO:1903826 |
| L-lysine transmembrane transport | 0.023372287 | GO:1903401 |
| proline biosynthetic process | 0.023372287 | GO:0006561 |
| ascorbate glutathione cycle | 0.026912131 | plantCyc |
| fructose 2,6-bisphosphate biosynthesis | 0.026912131 | plantCyc |
| L-ascorbate degradation V | 0.026912131 | plantCyc |
| L-asparagine degradation I | 0.026912131 | plantCyc |
| ornithine-citrulline shuttle | 0.026912131 | plantCyc |
| superpathway of aspartate and asparagine biosynthesis | 0.026912131 | plantCyc |
| seed maturation | 0.027999629 | GO:0010431 |
| proteolysis | 0.027999629 | GO:0006508 |
| Ascorbate and aldarate metabolism | 0.029130271 | KEGG pathway |
| sucrose biosynthesis I (from photosynthesis) | 0.040629352 | plantCyc |
| Calvin-Benson-Bassham cycle | 0.041445192 | plantCyc |
| RNA splicing | 0.044075971 | GO:0008380 |
| seed germination | 0.044322147 | GO:0009845 |
| Endocytosis | 0.048051778 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005137 | AT3G53120 (1.00E-70) | VPS37-1|Modifier of rudimentary (Mod(r)) protein |
| CRO_T007283 | AT5G57960 (0) | GTP-binding protein, HflX |
| CRO_T013240 | AT2G17220 (1.00E-30) | Kin3|kinase 3 |
| CRO_T017309 | AT3G16010 (6.00E-42) | Pentatricopeptide repeat (PPR-like) superfamily protein |
| CRO_T017989 | AT5G08100 (1.00E-108) | ASPGA1|asparaginase A1 |
| CRO_T022316 | AT1G55350 (0) | DEK1|DEFECTIVE KERNEL 1; EMB1275|embryo defective 1275; EMB80|EMBRYO DEFECTIVE 80 |
| CRO_T023466 | AT4G39460 (9.00E-18) | SAMC1|S-adenosylmethionine carrier 1; SAMT1|SAM TRANSPORTER1 |
| CRO_T025801 | AT1G04760 (2.00E-102) | ATVAMP726|vesicle-associated membrane protein 726 |
| CRO_T026240 | AT1G07890 (2.00E-22) | APX1|ascorbate peroxidase 1; MEE6|maternal effect embryo arrest 6 |
| CRO_T028427 | AT1G55350 (2.00E-40) | DEK1|DEFECTIVE KERNEL 1; EMB1275|embryo defective 1275; EMB80|EMBRYO DEFECTIVE 80 |
| CRO_T031765 | AT3G05170 (2.00E-100) | Phosphoglycerate mutase family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000087 | integral component of membrane jasmonic acid biosynthesis AP-3 adaptor complex C-19 gibberellin 2-beta-dioxygenase activity aminoacyl-tRNA hydrolase activity calcium-dependent cysteine-type endopeptidase activity gibberellin catabolic process endoplasmic reticulum organization lytic vacuole organization regulation of autophagy Autophagy - animal Diterpenoid biosynthesis Lysosome Phenylalanine metabolism pre-autophagosomal structure potassium ion transmembrane transporter activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Golgi to vacuole transport mitochondrial translation regulation of intracellular pH formation of glycosidic bonds, GlycosylTransferases: GTnc Golgi organization | details |
| TreatCFM000448 | protein targeting to peroxisome calcium-dependent cysteine-type endopeptidase activity Peroxisome biological regulation carbohydrate binding protein binding Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TreatCFM001184 | ornithine-citrulline shuttle Protein_kinases_phosphatases, PPC:1.3.1: Receptor-like protein kinase 26,27-dehydrozymosterol metabolism L-arginine biosynthesis I (via L-ornithine) L-ascorbate degradation V UMP biosynthesis I urea cycle Ascorbate and aldarate metabolism Pyrimidine metabolism arginine transmembrane transporter activity L-histidine transmembrane transporter activity L-ornithine transmembrane transporter activity early endosome membrane ascorbate glutathione cycle L-arginine biosynthesis II (acetyl cycle) L-glutamine degradation I L-lysine transmembrane transporter activity proline biosynthetic process L-arginine import L-lysine transmembrane transport arginine transmembrane transport L-ornithine transmembrane transport L-histidine transmembrane transport potassium ion transport seed maturation plant sterol biosynthesis nitrogen compound metabolic process seed germination solute:proton antiporter activity | details |
| TreatCFM001323 | L-asparagine degradation I formation of glycosidic bonds, GlycosylTransferases: GTnc superpathway of aspartate and asparagine biosynthesis early endosome membrane Apelin signaling pathway asparaginase activity autophagy cellular response to nitrogen starvation RNA splicing exocytosis vesicle fusion protein transport response to abscisic acid SNARE binding SNAP receptor activity ribosome binding Spliceosome chloroplast SNARE complex | details |
| TreatCFM001393 | carbohydrate binding glucan 1,3-alpha-glucosidase activity aldose 1-epimerase activity L-amino acid transmembrane transporter activity solute:proton antiporter activity negative regulation of biological process L-alpha-amino acid transmembrane transport hexose metabolic process L-amino acid transport MicroRNAs in cancer early endosome membrane potassium ion transport Glycolysis / Gluconeogenesis N-Glycan biosynthesis SNARE binding SNAP receptor activity cellular macromolecule metabolic process antiporter activity primary metabolic process exocytosis vesicle fusion | details |
| TreatCFM001962 | L-alpha-amino acid transmembrane transport L-amino acid transport hexose metabolic process MicroRNAs in cancer Thyroid hormone signaling pathway Glycolysis / Gluconeogenesis aldose 1-epimerase activity early endosome membrane L-amino acid transmembrane transporter activity Transcription_related, Transcription factor: MYB vesicle fusion exocytosis protein transport SNAP receptor activity SNARE binding antiporter activity carbohydrate binding | details |
| TreatCFM002100 | mitochondrion arginine transmembrane transporter activity L-ornithine transmembrane transporter activity proline-tRNA ligase activity L-histidine transmembrane transporter activity auxin binding auxin receptor activity inositol hexakisphosphate binding ornithine-citrulline shuttle EKC/KEOPS complex L-lysine transmembrane transporter activity tRNA threonylcarbamoyladenosine modification prolyl-tRNA aminoacylation regulation of photosynthesis L-ornithine transmembrane transport L-histidine transmembrane transport arginine transmembrane transport L-arginine import adenosine ribonucleotides de novo biosynthesis L-lysine transmembrane transport proline biosynthetic process pollen maturation stamen development formation of glycosidic bonds, GlycosylTransferases: GTnc plant ovule development mitochondrial proton-transporting ATP synthase complex lateral root formation RNA splicing seed development SCF ubiquitin ligase complex embryo sac development cobalt ion binding ribosome binding chloroplast proton-transporting ATP synthase activity, rotational mechanism ATP synthesis coupled proton transport auxin-activated signaling pathway | details |
| TreatCFM002156 | L-histidine transmembrane transport arginine transmembrane transport L-ornithine transmembrane transport CDP-diacylglycerol biosynthetic process L-arginine import L-lysine transmembrane transport proline biosynthetic process phosphatidate cytidylyltransferase activity L-lysine transmembrane transporter activity L-histidine transmembrane transporter activity arginine transmembrane transporter activity L-ornithine transmembrane transporter activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc integral component of membrane 26,27-dehydrozymosterol metabolism CDP-diacylglycerol biosynthesis II urate degradation to allantoin I aminoacyl-tRNA hydrolase activity ornithine-citrulline shuttle CDP-diacylglycerol biosynthesis I plant sterol biosynthesis Glycerophospholipid metabolism Starch and sucrose metabolism | details |
Expression profiles
 Show details about module gene expression profiling |