TreatCFM002100's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| mitochondrion | 0.004721285 | GO:0005739 |
| arginine transmembrane transporter activity | 0.007435521 | GO:0015181 |
| L-ornithine transmembrane transporter activity | 0.007435521 | GO:0000064 |
| proline-tRNA ligase activity | 0.007435521 | GO:0004827 |
| L-histidine transmembrane transporter activity | 0.007435521 | GO:0005290 |
| auxin binding | 0.007435521 | GO:0010011 |
| auxin receptor activity | 0.007435521 | GO:0038198 |
| inositol hexakisphosphate binding | 0.008496859 | GO:0000822 |
| ornithine-citrulline shuttle | 0.008501714 | plantCyc |
| EKC/KEOPS complex | 0.009027555 | GO:0000408 |
| L-lysine transmembrane transporter activity | 0.009292479 | GO:0015189 |
| tRNA threonylcarbamoyladenosine modification | 0.009596725 | GO:0002949 |
| prolyl-tRNA aminoacylation | 0.009596725 | GO:0006433 |
| regulation of photosynthesis | 0.009596725 | GO:0010109 |
| L-ornithine transmembrane transport | 0.009596725 | GO:1903352 |
| L-histidine transmembrane transport | 0.009596725 | GO:0089709 |
| arginine transmembrane transport | 0.009596725 | GO:1903826 |
| L-arginine import | 0.010966551 | GO:0043091 |
| adenosine ribonucleotides de novo biosynthesis | 0.011664498 | plantCyc |
| L-lysine transmembrane transport | 0.011993425 | GO:1903401 |
| proline biosynthetic process | 0.012791663 | GO:0006561 |
| pollen maturation | 0.013429857 | GO:0010152 |
| stamen development | 0.013951655 | GO:0048443 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.014157804 | cazy family |
| plant ovule development | 0.014386156 | GO:0048481 |
| mitochondrial proton-transporting ATP synthase complex | 0.016040688 | GO:0005753 |
| lateral root formation | 0.017700545 | GO:0010311 |
| RNA splicing | 0.0217211 | GO:0008380 |
| seed development | 0.0217211 | GO:0048316 |
| SCF ubiquitin ligase complex | 0.022540891 | GO:0019005 |
| embryo sac development | 0.023949664 | GO:0009553 |
| cobalt ion binding | 0.026401883 | GO:0050897 |
| ribosome binding | 0.037093108 | GO:0043022 |
| chloroplast | 0.03814694 | GO:0009507 |
| proton-transporting ATP synthase activity, rotational mechanism | 0.043131658 | GO:0046933 |
| ATP synthesis coupled proton transport | 0.046718818 | GO:0015986 |
| auxin-activated signaling pathway | 0.046718818 | GO:0009734 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001460 | AT1G12820 (0) | AFB3|auxin signaling F-box 3 |
| CRO_T007283 | AT5G57960 (0) | GTP-binding protein, HflX |
| CRO_T010358 | AT2G45270 (5.00E-155) | GCP1|glycoprotease 1 |
| CRO_T013404 | AT3G24530 (7.00E-11) | AAA-type ATPase family protein / ankyrin repeat family protein |
| CRO_T015388 | AT5G52520 (5.00E-119) | OVA6|OVULE ABORTION 6; PRORS1|PROLYL-TRNA SYNTHETASE 1 |
| CRO_T017309 | AT3G16010 (6.00E-42) | Pentatricopeptide repeat (PPR-like) superfamily protein |
| CRO_T020020 | AT5G13450 (7.00E-43) | ATP5|delta subunit of Mt ATP synthase |
| CRO_T023466 | AT4G39460 (9.00E-18) | SAMC1|S-adenosylmethionine carrier 1; SAMT1|SAM TRANSPORTER1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001079 | calcium-dependent cysteine-type endopeptidase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.3.1: Receptor-like protein kinase L-ornithine transmembrane transporter activity asparaginase activity L-histidine transmembrane transporter activity arginine transmembrane transporter activity sedoheptulose-bisphosphatase activity L-lysine transmembrane transporter activity early endosome membrane L-histidine transmembrane transport L-arginine import L-ornithine transmembrane transport arginine transmembrane transport L-lysine transmembrane transport proline biosynthetic process ascorbate glutathione cycle fructose 2,6-bisphosphate biosynthesis L-ascorbate degradation V L-asparagine degradation I ornithine-citrulline shuttle superpathway of aspartate and asparagine biosynthesis seed maturation proteolysis Ascorbate and aldarate metabolism sucrose biosynthesis I (from photosynthesis) Calvin-Benson-Bassham cycle RNA splicing seed germination Endocytosis | details |
| TreatCFM001184 | ornithine-citrulline shuttle Protein_kinases_phosphatases, PPC:1.3.1: Receptor-like protein kinase 26,27-dehydrozymosterol metabolism L-arginine biosynthesis I (via L-ornithine) L-ascorbate degradation V UMP biosynthesis I urea cycle Ascorbate and aldarate metabolism Pyrimidine metabolism arginine transmembrane transporter activity L-histidine transmembrane transporter activity L-ornithine transmembrane transporter activity early endosome membrane ascorbate glutathione cycle L-arginine biosynthesis II (acetyl cycle) L-glutamine degradation I L-lysine transmembrane transporter activity proline biosynthetic process L-arginine import L-lysine transmembrane transport arginine transmembrane transport L-ornithine transmembrane transport L-histidine transmembrane transport potassium ion transport seed maturation plant sterol biosynthesis nitrogen compound metabolic process seed germination solute:proton antiporter activity | details |
| TreatCFM001227 | rRNA methylation mitochondrial proton-transporting ATP synthase complex succinate dehydrogenase (ubiquinone) activity 3 iron, 4 sulfur cluster binding rRNA methyltransferase activity adenosine ribonucleotides de novo biosynthesis aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) TCA cycle II (plants and fungi) ATP synthesis coupled proton transport tricarboxylic acid cycle cobalt ion binding proton-transporting ATP synthase activity, rotational mechanism 2 iron, 2 sulfur cluster binding zinc ion binding 4 iron, 4 sulfur cluster binding | details |
| TreatCFM001323 | L-asparagine degradation I formation of glycosidic bonds, GlycosylTransferases: GTnc superpathway of aspartate and asparagine biosynthesis early endosome membrane Apelin signaling pathway asparaginase activity autophagy cellular response to nitrogen starvation RNA splicing exocytosis vesicle fusion protein transport response to abscisic acid SNARE binding SNAP receptor activity ribosome binding Spliceosome chloroplast SNARE complex | details |
| TreatCFM001665 | adenosine ribonucleotides de novo biosynthesis fatty acid binding auxin binding proline-tRNA ligase activity auxin receptor activity inositol hexakisphosphate binding regulation of photosynthesis tRNA threonylcarbamoyladenosine modification prolyl-tRNA aminoacylation intramolecular lyase activity plant ovule development positive regulation of RNA polymerase II transcriptional preinitiation complex assembly pollen maturation positive regulation of proteasomal protein catabolic process stamen development proteasome-activating ATPase activity lateral root formation chloroplast stroma mitochondrial proton-transporting ATP synthase complex EKC/KEOPS complex cytosolic proteasome complex nuclear proteasome complex TBP-class protein binding proteasome regulatory particle, base subcomplex SCF ubiquitin ligase complex seed development cobalt ion binding ER-associated ubiquitin-dependent protein catabolic process embryo sac development proton-transporting ATP synthase activity, rotational mechanism ATP synthesis coupled proton transport auxin-activated signaling pathway metalloendopeptidase activity zinc ion binding Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| TreatCFM001666 | adenosine ribonucleotides de novo biosynthesis Transcription_related, Transcription factor: M-type mitochondrial proton-transporting ATP synthase complex nuclear proteasome complex cytosolic proteasome complex EKC/KEOPS complex tRNA threonylcarbamoyladenosine modification positive regulation of RNA polymerase II transcriptional preinitiation complex assembly positive regulation of proteasomal protein catabolic process proteasome regulatory particle, base subcomplex ER-associated ubiquitin-dependent protein catabolic process Proteasome Ras signaling pathway TBP-class protein binding cobalt ion binding proteasome-activating ATPase activity ATP synthesis coupled proton transport proton-transporting ATP synthase activity, rotational mechanism metalloendopeptidase activity transferase activity, transferring acyl groups other than amino-acyl groups small GTPase mediated signal transduction embryo development ending in seed dormancy | details |
| TreatCFM001770 | auxin binding proline-tRNA ligase activity inositol hexakisphosphate binding glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity auxin receptor activity Protein_kinases_phosphatases, PPC:4.1.5.1: WNK like kinase - with no lysine kinase regulation of photosynthesis prolyl-tRNA aminoacylation Transcription_related, Transcription regulator: GNAT pollen maturation stamen development plant ovule development seed development glucose metabolic process lateral root formation embryo sac development diacylglycerol and triacylglycerol biosynthesis gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) sucrose biosynthesis I (from photosynthesis) SCF ubiquitin ligase complex auxin-activated signaling pathway NADP binding | details |
| TreatCFM001859 | tetrapyrrole biosynthesis I (from glutamate) hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Phagosome microtubule-based process structural constituent of cytoskeleton beta-galactosidase activity response to stress | details |
| TreatCFM001860 | beta-galactosidase activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc retrograde vesicle-mediated transport, Golgi to ER ER to Golgi vesicle-mediated transport SNARE interactions in vesicular transport carbohydrate binding | details |
| TreatCFM002156 | L-histidine transmembrane transport arginine transmembrane transport L-ornithine transmembrane transport CDP-diacylglycerol biosynthetic process L-arginine import L-lysine transmembrane transport proline biosynthetic process phosphatidate cytidylyltransferase activity L-lysine transmembrane transporter activity L-histidine transmembrane transporter activity arginine transmembrane transporter activity L-ornithine transmembrane transporter activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc integral component of membrane 26,27-dehydrozymosterol metabolism CDP-diacylglycerol biosynthesis II urate degradation to allantoin I aminoacyl-tRNA hydrolase activity ornithine-citrulline shuttle CDP-diacylglycerol biosynthesis I plant sterol biosynthesis Glycerophospholipid metabolism Starch and sucrose metabolism | details |
Expression profiles
 Show details about module gene expression profiling |