TreatCFM001382's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| pyrimidine ribonucleosides salvage I | 0.002126245 | plantCyc |
| Protein_kinases_phosphatases, PPC:1.8.1: Leucine Rich Repeat Kinase I | 0.002659181 | kinase family |
| intracellular | 0.005359615 | GO:0005622 |
| positive regulation of autophagy | 0.007710803 | GO:0010508 |
| RNA biosynthetic process | 0.01348892 | GO:0032774 |
| activation of MAPKK activity | 0.025668513 | GO:0000186 |
| oxidized purine nucleobase lesion DNA N-glycosylase activity | 0.027079862 | GO:0008534 |
| MAPK cascade | 0.034611553 | GO:0000165 |
| cytosolic small ribosomal subunit | 0.035343288 | GO:0022627 |
| MAP kinase kinase kinase activity | 0.036058494 | GO:0004709 |
| damaged DNA binding | 0.036058494 | GO:0003684 |
| small GTPase mediated signal transduction | 0.04284573 | GO:0007264 |
| DNA repair | 0.04284573 | GO:0006281 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000900 | AT2G31610 (3.00E-114) | Ribosomal protein S3 family protein |
| CRO_T003497 | - | - |
| CRO_T017293 | AT2G01460 (5.00E-37) | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| CRO_T024226 | AT5G48740 (0) | Leucine-rich repeat protein kinase family protein |
| CRO_T025654 | AT5G60860 (6.00E-121) | AtRABA1f|RAB GTPase homolog A1F |
| CRO_T033378 | AT4G08540 (1.00E-147) | DNA-directed RNA polymerase II protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000155 | dTTP biosynthetic process dTDP biosynthetic process dUDP biosynthetic process positive regulation of autophagy response to extracellular stimulus thymidylate kinase activity organ morphogenesis pyrimidine deoxyribonucleotide phosphorylation pyrimidine deoxyribonucleotides de novo biosynthesis II superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) pyrimidine deoxyribonucleotides de novo biosynthesis I regulation of root development lateral root development reactive oxygen species metabolic process endoplasmic reticulum unfolded protein response fruit development RNA biosynthetic process defense response to fungus, incompatible interaction uridylate kinase activity endoplasmic reticulum heterotrimeric G-protein complex negative regulation of abscisic acid-activated signaling pathway Cul4-RING E3 ubiquitin ligase complex Transcription_related, Transcription factor: AP2 Transcription_related, Transcription regulator: mTERF histone acetyltransferase activity histone acetylation Pyrimidine metabolism Ras signaling pathway jasmonic acid mediated signaling pathway response to ethylene phosphoprotein phosphatase activity DNA-directed RNA polymerase activity | details |
| TreatCFM001017 | organic acid transmembrane transport organic acid transmembrane transporter activity metalloendopeptidase activity small GTPase mediated signal transduction | details |
| TreatCFM001155 | regulation of root development response to extracellular stimulus lateral root development organ morphogenesis fruit development defense response to fungus, incompatible interaction reactive oxygen species metabolic process endoplasmic reticulum unfolded protein response heterotrimeric G-protein complex Cul4-RING E3 ubiquitin ligase complex negative regulation of abscisic acid-activated signaling pathway histone acetylation histone acetyltransferase activity glucan endo-1,3-beta-D-glucosidase activity oxidized purine nucleobase lesion DNA N-glycosylase activity Ras signaling pathway jasmonic acid mediated signaling pathway damaged DNA binding response to ethylene adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription regulator: mTERF cytosolic small ribosomal subunit DNA repair small GTPase mediated signal transduction | details |
| TreatCFM001372 | Glucagon signaling pathway DNA endoreduplication glycosaminoglycan biosynthetic process trichome branching heparan sulfate proteoglycan biosynthetic process Cell cycle formation of glycosidic bonds, GlycosylTransferases: GTnc Ubiquitin_Proteasome_system, E3: HECT transcriptional repressor complex glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity Transcription_related, Transcription factor: MYB-related Ubiquitin mediated proteolysis protein ubiquitination involved in ubiquitin-dependent protein catabolic process | details |
| TreatCFM001404 | cyanate degradation cyanate catabolic process negative regulation of MAP kinase activity negative regulation of microtubule depolymerization photorespiration microtubule plus-end binding cyanate hydratase activity cortical microtubule organization cell cortex spindle microtubule nucleus oxidized purine nucleobase lesion DNA N-glycosylase activity protein stabilization MAPK signaling pathway Nitrogen metabolism mitotic nuclear division phragmoplast cell growth response to hormone cytosol damaged DNA binding phosphatase activity cytosolic small ribosomal subunit | details |
| TreatCFM001638 | Protein_kinases_phosphatases, PPC:2.2.1: Unknown Function Kinase Cell cycle - Caulobacter Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family protein kinase activity | details |
| TreatCFM001675 | histone H4 acetylation histone H2A acetylation Protein_kinases_phosphatases, PPC:1.8.1: Leucine Rich Repeat Kinase I NuA4 histone acetyltransferase complex negative regulation of transcription, DNA-templated chromatin remodeling activation of MAPKK activity MAPK cascade MAP kinase kinase kinase activity large ribosomal subunit rRNA binding DNA repair | details |
| TreatCFM001751 | formation of glycosidic bonds, GlycosylTransferases: GTnc Ubiquitin_Proteasome_system, E3: HECT histone ubiquitination DNA endoreduplication innate immune response chloride transport glycosaminoglycan biosynthetic process heparan sulfate proteoglycan biosynthetic process protein monoubiquitination actin filament depolymerization trichome branching reproductive structure development glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity voltage-gated chloride channel activity Regulation of actin cytoskeleton regulation of anion transmembrane transport post-embryonic development Transcription_related, Transcription factor: C3H ion transmembrane transport Ubiquitin mediated proteolysis actin cytoskeleton single-organism cellular process protein ubiquitination involved in ubiquitin-dependent protein catabolic process actin binding metal ion binding | details |
| TreatCFM001961 | exon-exon junction complex adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc RNA splicing protein processing oxidized purine nucleobase lesion DNA N-glycosylase activity glucan endo-1,3-beta-D-glucosidase activity cytosolic small ribosomal subunit damaged DNA binding | details |
Expression profiles
 Show details about module gene expression profiling |