TreatCFM001155's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| regulation of root development | 0.009587178 | GO:2000280 |
| response to extracellular stimulus | 0.009587178 | GO:0009991 |
| lateral root development | 0.009587178 | GO:0048527 |
| organ morphogenesis | 0.009587178 | GO:0009887 |
| fruit development | 0.009587178 | GO:0010154 |
| defense response to fungus, incompatible interaction | 0.009587178 | GO:0009817 |
| reactive oxygen species metabolic process | 0.009587178 | GO:0072593 |
| endoplasmic reticulum unfolded protein response | 0.009587178 | GO:0030968 |
| heterotrimeric G-protein complex | 0.013029989 | GO:0005834 |
| Cul4-RING E3 ubiquitin ligase complex | 0.014326635 | GO:0080008 |
| negative regulation of abscisic acid-activated signaling pathway | 0.014906777 | GO:0009788 |
| histone acetylation | 0.018200838 | GO:0016573 |
| histone acetyltransferase activity | 0.021823073 | GO:0004402 |
| glucan endo-1,3-beta-D-glucosidase activity | 0.021823073 | GO:0042973 |
| oxidized purine nucleobase lesion DNA N-glycosylase activity | 0.021823073 | GO:0008534 |
| Ras signaling pathway | 0.022395957 | KEGG pathway |
| jasmonic acid mediated signaling pathway | 0.022630484 | GO:0009867 |
| damaged DNA binding | 0.023094835 | GO:0003684 |
| response to ethylene | 0.024724823 | GO:0009723 |
| adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | 0.026495719 | cazy family |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.026495719 | cazy family |
| Transcription_related, Transcription regulator: mTERF | 0.026495719 | TF family |
| cytosolic small ribosomal subunit | 0.041563706 | GO:0022627 |
| DNA repair | 0.045681935 | GO:0006281 |
| small GTPase mediated signal transduction | 0.045681935 | GO:0007264 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000900 | AT2G31610 (3.00E-114) | Ribosomal protein S3 family protein |
| CRO_T009098 | AT2G36000 (2.00E-21) | EMB3114|EMBRYO DEFECTIVE 3114 |
| CRO_T011567 | AT5G50350 (1.00E-06) | unknown protein |
| CRO_T025654 | AT5G60860 (6.00E-121) | AtRABA1f|RAB GTPase homolog A1F |
| CRO_T030184 | - | - |
| CRO_T031860 | AT1G11820 (7.00E-170) | O-Glycosyl hydrolases family 17 protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000122 | 3-hydroxyisobutyryl-CoA hydrolase activity L-valine degradation I histone acetyltransferase activity heterotrimeric G-protein complex Cul4-RING E3 ubiquitin ligase complex organ morphogenesis regulation of root development lateral root development fruit development defense response to fungus, incompatible interaction response to extracellular stimulus endoplasmic reticulum unfolded protein response reactive oxygen species metabolic process negative regulation of abscisic acid-activated signaling pathway Ras signaling pathway histone acetylation jasmonic acid mediated signaling pathway Transcription_related, Transcription regulator: mTERF response to ethylene | details |
| TreatCFM000155 | dTTP biosynthetic process dTDP biosynthetic process dUDP biosynthetic process positive regulation of autophagy response to extracellular stimulus thymidylate kinase activity organ morphogenesis pyrimidine deoxyribonucleotide phosphorylation pyrimidine deoxyribonucleotides de novo biosynthesis II superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) pyrimidine deoxyribonucleotides de novo biosynthesis I regulation of root development lateral root development reactive oxygen species metabolic process endoplasmic reticulum unfolded protein response fruit development RNA biosynthetic process defense response to fungus, incompatible interaction uridylate kinase activity endoplasmic reticulum heterotrimeric G-protein complex negative regulation of abscisic acid-activated signaling pathway Cul4-RING E3 ubiquitin ligase complex Transcription_related, Transcription factor: AP2 Transcription_related, Transcription regulator: mTERF histone acetyltransferase activity histone acetylation Pyrimidine metabolism Ras signaling pathway jasmonic acid mediated signaling pathway response to ethylene phosphoprotein phosphatase activity DNA-directed RNA polymerase activity | details |
| TreatCFM001017 | organic acid transmembrane transport organic acid transmembrane transporter activity metalloendopeptidase activity small GTPase mediated signal transduction | details |
| TreatCFM001331 | 3-deoxy-8-phosphooctulonate synthase activity thymidylate kinase activity response to extracellular stimulus dUDP biosynthetic process dTTP biosynthetic process dTDP biosynthetic process organ morphogenesis regulation of root development reactive oxygen species metabolic process lateral root development CMP-3-deoxy-D-manno-octulosonate biosynthesis pyrimidine deoxyribonucleotide phosphorylation pyrimidine deoxyribonucleotides de novo biosynthesis II superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) fruit development endoplasmic reticulum unfolded protein response uridylate kinase activity defense response to fungus, incompatible interaction pyrimidine deoxyribonucleotides de novo biosynthesis I endoplasmic reticulum heterotrimeric G-protein complex negative regulation of abscisic acid-activated signaling pathway histone acetyltransferase activity Cul4-RING E3 ubiquitin ligase complex histone acetylation Transcription_related, Transcription regulator: mTERF Lipopolysaccharide biosynthesis jasmonic acid mediated signaling pathway response to ethylene Ras signaling pathway Pyrimidine metabolism biosynthetic process helicase activity RNA degradation | details |
| TreatCFM001382 | pyrimidine ribonucleosides salvage I Protein_kinases_phosphatases, PPC:1.8.1: Leucine Rich Repeat Kinase I intracellular positive regulation of autophagy RNA biosynthetic process activation of MAPKK activity oxidized purine nucleobase lesion DNA N-glycosylase activity MAPK cascade cytosolic small ribosomal subunit MAP kinase kinase kinase activity damaged DNA binding small GTPase mediated signal transduction DNA repair | details |
| TreatCFM001404 | cyanate degradation cyanate catabolic process negative regulation of MAP kinase activity negative regulation of microtubule depolymerization photorespiration microtubule plus-end binding cyanate hydratase activity cortical microtubule organization cell cortex spindle microtubule nucleus oxidized purine nucleobase lesion DNA N-glycosylase activity protein stabilization MAPK signaling pathway Nitrogen metabolism mitotic nuclear division phragmoplast cell growth response to hormone cytosol damaged DNA binding phosphatase activity cytosolic small ribosomal subunit | details |
| TreatCFM001930 | response to extracellular stimulus lateral root development reactive oxygen species metabolic process organ morphogenesis endoplasmic reticulum unfolded protein response regulation of root development fruit development defense response to fungus, incompatible interaction leucopelargonidin and leucocyanidin biosynthesis negative regulation of abscisic acid-activated signaling pathway Ras signaling pathway histone acetylation Transcription_related, Transcription regulator: mTERF heterotrimeric G-protein complex jasmonic acid mediated signaling pathway Cul4-RING E3 ubiquitin ligase complex Phenylpropanoid biosynthesis response to ethylene RNA degradation exocytosis exocyst | details |
| TreatCFM001961 | exon-exon junction complex adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc RNA splicing protein processing oxidized purine nucleobase lesion DNA N-glycosylase activity glucan endo-1,3-beta-D-glucosidase activity cytosolic small ribosomal subunit damaged DNA binding | details |
| TreatCFM002066 | 3-dehydroquinate biosynthesis I queuine tRNA-ribosyltransferase activity 3-deoxy-7-phosphoheptulonate synthase activity queuosine biosynthetic process aromatic amino acid family biosynthetic process glucan endo-1,3-beta-D-glucosidase activity cellulase activity cellulose catabolic process adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc lyase activity Biosynthesis of amino acids Starch and sucrose metabolism cell redox homeostasis | details |
| TreatCFM002101 | CMP-3-deoxy-D-manno-octulosonate biosynthesis RNA degradation Lipopolysaccharide biosynthesis fruit development organ morphogenesis reactive oxygen species metabolic process endoplasmic reticulum unfolded protein response lateral root development regulation of root development response to extracellular stimulus defense response to fungus, incompatible interaction 3-deoxy-8-phosphooctulonate synthase activity Autophagy - animal Ras signaling pathway Protein_kinases_phosphatases, PPC:1.1.1: Leucine-rich transmembrane protein kinase/Strubbelig Receptor Family 1 ATG1/ULK1 kinase complex heterotrimeric G-protein complex negative regulation of abscisic acid-activated signaling pathway autophagy histone acetylation ATP binding large ribosomal subunit rRNA binding Cul4-RING E3 ubiquitin ligase complex histone acetyltransferase activity Transcription_related, Transcription regulator: mTERF jasmonic acid mediated signaling pathway response to ethylene poly(A) RNA binding biosynthetic process RNA processing | details |
| TreatCFM002138 | glutaminyl-tRNAgln biosynthesis via transamidation lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3) queuine tRNA-ribosyltransferase activity inositol-1,3,4-trisphosphate 6-kinase activity glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity inositol tetrakisphosphate 1-kinase activity inositol-1,3,4-trisphosphate 5-kinase activity inositol trisphosphate metabolic process glutaminyl-tRNAGln biosynthesis via transamidation queuosine biosynthetic process glutamyl-tRNA(Gln) amidotransferase complex mitochondrial translation 1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza) glucan endo-1,3-beta-D-glucosidase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Aminoacyl-tRNA biosynthesis Inositol phosphate metabolism RNA secondary structure unwinding Starch and sucrose metabolism cell redox homeostasis | details |
| TreatCFM002144 | glutaminyl-tRNAgln biosynthesis via transamidation ATG1/ULK1 kinase complex heterotrimeric G-protein complex glutamyl-tRNA(Gln) amidotransferase complex lateral root development glutaminyl-tRNAGln biosynthesis via transamidation response to extracellular stimulus regulation of root development organ morphogenesis reactive oxygen species metabolic process glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity endoplasmic reticulum unfolded protein response fruit development defense response to fungus, incompatible interaction mitochondrial translation negative regulation of abscisic acid-activated signaling pathway Cul4-RING E3 ubiquitin ligase complex autophagy histone acetylation Transcription_related, Transcription regulator: mTERF Autophagy - animal Ras signaling pathway histone acetyltransferase activity jasmonic acid mediated signaling pathway response to ethylene exocyst exocytosis Aminoacyl-tRNA biosynthesis RNA degradation helicase activity | details |
Expression profiles
 Show details about module gene expression profiling |