TreatCFM001424's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| response to stimulus | 0.008452065 | GO:0050896 |
| Transcription_related, Transcription regulator: ARID | 0.012505162 | TF family |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.019852293 | cazy family |
| peroxidase activity | 0.047468491 | GO:0004601 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003070 | AT5G16490 (3.00E-16) | RIC4|ROP-interactive CRIB motif-containing protein 4 |
| CRO_T008971 | AT1G47790 (1.00E-13) | F-box and associated interaction domains-containing protein |
| CRO_T009650 | AT1G76110 (1.00E-26) | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain |
| CRO_T011042 | AT1G62420 (1.00E-47) | Protein of unknown function (DUF506) |
| CRO_T013140 | AT1G12030 (3.00E-21) | Protein of unknown function (DUF506) |
| CRO_T020728 | AT2G30700 (2.00E-95) | unknown protein |
| CRO_T032189 | AT1G63450 (1.00E-172) | RHS8|root hair specific 8; XUT1|XYLOGLUCAN-SPECIFIC GALACTURONOSYLTRANSFERASE 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000073 | cullin deneddylation COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM Oxidative phosphorylation | details |
| TreatCFM000084 | formation of glycosidic bonds, GlycosylTransferases: GTnc protein N-glycosylation (eukaryotic, high mannose) C-19 gibberellin 2-beta-dioxygenase activity gibberellin catabolic process aspartyl esterase activity pectinesterase activity pectinesterase inhibitor activity transferase activity, transferring hexosyl groups Diterpenoid biosynthesis N-Glycan biosynthesis cell wall modification pectin catabolic process response to light stimulus negative regulation of catalytic activity Pentose and glucuronate interconversions | details |
| TreatCFM000118 | Ubiquitin_Proteasome_system, DUB: JAMM formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM000126 | Ubiquitin_Proteasome_system, DUB: JAMM proteasome complex Proteasome proteasome-mediated ubiquitin-dependent protein catabolic process | details |
| TreatCFM000171 | details | |
| TreatCFM000207 | proteasome complex xylogalacturonan biosynthesis Ubiquitin_Proteasome_system, DUB: JAMM Proteasome formation of glycosidic bonds, GlycosylTransferases: GTnc proteasome-mediated ubiquitin-dependent protein catabolic process transferase activity | details |
| TreatCFM000214 | tubulin binding formation of glycosidic bonds, GlycosylTransferases: GTnc lipid IVA biosynthesis Lipopolysaccharide biosynthesis organophosphate metabolic process carbohydrate derivative metabolic process protein N-glycosylation (eukaryotic, high mannose) tubulin complex assembly cullin deneddylation | details |
| TreatCFM000253 | protein storage vacuole seed development Transcription_related, Transcription regulator: SNF2 Homologous recombination | details |
| TreatCFM000324 | details | |
| TreatCFM000348 | details | |
| TreatCFM000528 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds Fatty acid metabolism nitrogen compound metabolic process plastid transferase activity, transferring acyl groups ligase activity | details |
| TreatCFM000539 | details | |
| TreatCFM000574 | cullin deneddylation COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM Transcription_related, Transcription factor: B3 Transcription_related, Transcription factor: WRKY | details |
| TreatCFM000601 | cullin deneddylation COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM | details |
| TreatCFM000612 | Ubiquitin_Proteasome_system, DUB: JAMM Proteasome proteasome complex proteasome-mediated ubiquitin-dependent protein catabolic process | details |
| TreatCFM000632 | mitochondrial respiratory chain chlorophyll catabolic process cytochrome complex assembly | details |
| TreatCFM000818 | AP-5 adaptor complex | details |
| TreatCFM000903 | Transcription_related, Transcription factor: HB Glycosylphosphatidylinositol(GPI)-anchor biosynthesis GPI-anchor transamidase complex vesicle docking involved in exocytosis attachment of GPI anchor to protein chaperone-mediated protein folding amino acid transmembrane transport translational initiation RNA transport | details |
| TreatCFM001043 | details | |
| TreatCFM001058 | details | |
| TreatCFM001084 | cullin deneddylation COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM | details |
| TreatCFM001206 | Ubiquitin_Proteasome_system, DUB: JAMM cullin deneddylation COP9 signalosome nitrogen compound metabolic process hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds Phenylpropanoid biosynthesis plastid coenzyme binding transferase activity, transferring acyl groups | details |
| TreatCFM001316 | details | |
| TreatCFM001704 | Ubiquitin_Proteasome_system, DUB: JAMM hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds RNA polymerase II transcription factor activity, sequence-specific DNA binding cullin deneddylation ribosomal large subunit assembly nitrogen compound metabolic process COP9 signalosome nucleoplasm transferase activity, transferring acyl groups | details |
Expression profiles
 Show details about module gene expression profiling |