TreatCFM000207's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| proteasome complex | 0.003011068 | GO:0000502 |
| xylogalacturonan biosynthesis | 0.004071992 | plantCyc |
| Ubiquitin_Proteasome_system, DUB: JAMM | 0.007440758 | ubs family |
| Proteasome | 0.008130157 | KEGG pathway |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.009286528 | cazy family |
| proteasome-mediated ubiquitin-dependent protein catabolic process | 0.010066142 | GO:0043161 |
| transferase activity | 0.045914998 | GO:0016740 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003404 | - | - |
| CRO_T020728 | AT2G30700 (2.00E-95) | unknown protein |
| CRO_T022074 | - | - |
| CRO_T027524 | AT1G27440 (0) | ATGUT1; GUT2; IRX10|Exostosin family protein |
| CRO_T028538 | - | - |
| CRO_T033225 | AT3G11270 (4.00E-157) | MEE34|maternal effect embryo arrest 34 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000026 | Ubiquitin_Proteasome_system, DUB: JAMM Proteasome carbohydrate transport proteasome-mediated ubiquitin-dependent protein catabolic process proteasome complex | details |
| TreatCFM000046 | details | |
| TreatCFM000073 | cullin deneddylation COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM Oxidative phosphorylation | details |
| TreatCFM000078 | proteasome complex Transcription_related, Transcription factor: GeBP Ubiquitin_Proteasome_system, DUB: JAMM Proteasome Transcription_related, Transcription factor: Trihelix proteasome-mediated ubiquitin-dependent protein catabolic process | details |
| TreatCFM000084 | formation of glycosidic bonds, GlycosylTransferases: GTnc protein N-glycosylation (eukaryotic, high mannose) C-19 gibberellin 2-beta-dioxygenase activity gibberellin catabolic process aspartyl esterase activity pectinesterase activity pectinesterase inhibitor activity transferase activity, transferring hexosyl groups Diterpenoid biosynthesis N-Glycan biosynthesis cell wall modification pectin catabolic process response to light stimulus negative regulation of catalytic activity Pentose and glucuronate interconversions | details |
| TreatCFM000099 | Spliceosome sulfate activation for sulfonation sulfate reduction II (assimilatory) Transcription_related, Transcription factor: NAC Ubiquitin_Proteasome_system, DUB: JAMM HTLV-I infection L-valine degradation I | details |
| TreatCFM000118 | Ubiquitin_Proteasome_system, DUB: JAMM formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM000126 | Ubiquitin_Proteasome_system, DUB: JAMM proteasome complex Proteasome proteasome-mediated ubiquitin-dependent protein catabolic process | details |
| TreatCFM000171 | details | |
| TreatCFM000183 | calcium ion transport Ubiquitin_Proteasome_system, DUB: JAMM Proteasome proteasome-mediated ubiquitin-dependent protein catabolic process proteasome complex | details |
| TreatCFM000214 | tubulin binding formation of glycosidic bonds, GlycosylTransferases: GTnc lipid IVA biosynthesis Lipopolysaccharide biosynthesis organophosphate metabolic process carbohydrate derivative metabolic process protein N-glycosylation (eukaryotic, high mannose) tubulin complex assembly cullin deneddylation | details |
| TreatCFM000253 | protein storage vacuole seed development Transcription_related, Transcription regulator: SNF2 Homologous recombination | details |
| TreatCFM000272 | xyloglucan biosynthetic process endomembrane system organization cellular response to gravity fucose biosynthetic process | details |
| TreatCFM000279 | Ubiquitin_Proteasome_system, DUB: JAMM Golgi vesicle budding phospholipid translocation Proteasome phospholipid-translocating ATPase activity proteasome-mediated ubiquitin-dependent protein catabolic process proteasome complex | details |
| TreatCFM000284 | second spliceosomal transesterification activity generation of catalytic spliceosome for second transesterification step nuclear retention of unspliced pre-mRNA at the site of transcription Ubiquitin_Proteasome_system, DUB: JAMM U2-type post-spliceosomal complex U5 snRNP proteasome complex U4/U6 x U5 tri-snRNP complex proteasome-mediated ubiquitin-dependent protein catabolic process Proteasome Spliceosome | details |
| TreatCFM000285 | Ubiquitin_Proteasome_system, DUB: JAMM precatalytic spliceosome proteasome complex response to salt stress proteasome-mediated ubiquitin-dependent protein catabolic process Proteasome Spliceosome | details |
| TreatCFM000324 | details | |
| TreatCFM000348 | details | |
| TreatCFM000349 | benzoyl-CoA biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: BES1 Transcription_related, Transcription regulator: LIM Ubiquitin_Proteasome_system, DUB: JAMM glycoprotein 2-beta-D-xylosyltransferase activity fatty acid β-oxidation II (peroxisome) transcription factor activity, sequence-specific DNA binding transcription regulatory region DNA binding benzoate biosynthesis I (CoA-dependent, β-oxidative) protein N-linked glycosylation formation of translation preinitiation complex regulation of transcription, DNA-templated carbohydrate transport regulation of translational initiation brassinosteroid mediated signaling pathway | details |
| TreatCFM000390 | Ubiquitin_Proteasome_system, DUB: JAMM L-phenylalanine biosynthesis II L-phenylalanine biosynthesis III (cytosolic, plants) prephenate dehydratase activity arogenate dehydratase activity L-phenylalanine biosynthetic process oxalate metabolic process oxalate decarboxylase activity nutrient reservoir activity manganese ion binding carbohydrate transport amino acid binding proteasome-mediated ubiquitin-dependent protein catabolic process Proteasome Biosynthesis of amino acids | details |
| TreatCFM000403 | Ubiquitin_Proteasome_system, DUB: JAMM proteasome complex Proteasome proteasome-mediated ubiquitin-dependent protein catabolic process | details |
| TreatCFM000416 | Ubiquitin_Proteasome_system, DUB: JAMM proteasome complex Proteasome proteasome-mediated ubiquitin-dependent protein catabolic process | details |
| TreatCFM000423 | Ubiquitin_Proteasome_system, DUB: JAMM proteasome complex Proteasome nucleic acid metabolic process cellular macromolecule metabolic process proteasome-mediated ubiquitin-dependent protein catabolic process | details |
| TreatCFM000430 | Ubiquitin_Proteasome_system, DUB: JAMM Proteasome chloroplast accumulation movement proteasome complex microtubule proteasome-mediated ubiquitin-dependent protein catabolic process microtubule-based movement | details |
| TreatCFM000453 | Ubiquitin_Proteasome_system, DUB: JAMM proteasome complex proteasome-mediated ubiquitin-dependent protein catabolic process Proteasome Sesquiterpenoid and triterpenoid biosynthesis | details |
| TreatCFM000528 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds Fatty acid metabolism nitrogen compound metabolic process plastid transferase activity, transferring acyl groups ligase activity | details |
| TreatCFM000539 | details | |
| TreatCFM000574 | cullin deneddylation COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM Transcription_related, Transcription factor: B3 Transcription_related, Transcription factor: WRKY | details |
| TreatCFM000601 | cullin deneddylation COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM | details |
| TreatCFM000612 | Ubiquitin_Proteasome_system, DUB: JAMM Proteasome proteasome complex proteasome-mediated ubiquitin-dependent protein catabolic process | details |
| TreatCFM000613 | Ubiquitin_Proteasome_system, DUB: JAMM proteasome complex precatalytic spliceosome COP9 signalosome cullin deneddylation proteasome-mediated ubiquitin-dependent protein catabolic process response to salt stress Proteasome | details |
| TreatCFM000632 | mitochondrial respiratory chain chlorophyll catabolic process cytochrome complex assembly | details |
| TreatCFM000686 | integral component of plasma membrane Smc5-Smc6 complex Ubiquitin_Proteasome_system, DUB: JAMM Proteasome proteasome complex cellular water homeostasis calcium ion transmembrane transport single-organism transport resolution of recombination intermediates double-strand break repair via homologous recombination ion transmembrane transport water channel activity calcium-transporting ATPase activity glycerol channel activity Transcription_related, Transcription factor: bHLH proteasome-mediated ubiquitin-dependent protein catabolic process calmodulin binding | details |
| TreatCFM000715 | Ubiquitin_Proteasome_system, DUB: JAMM cullin deneddylation COP9 signalosome proteasome complex Proteasome proteasome-mediated ubiquitin-dependent protein catabolic process | details |
| TreatCFM000741 | proteasome complex Ubiquitin_Proteasome_system, DUB: JAMM Proteasome proteasome-mediated ubiquitin-dependent protein catabolic process Transcription_related, Transcription factor: ERF | details |
| TreatCFM000799 | Ubiquitin_Proteasome_system, DUB: JAMM Proteasome proteasome complex proteasome-mediated ubiquitin-dependent protein catabolic process intracellular part | details |
| TreatCFM000818 | AP-5 adaptor complex | details |
| TreatCFM000843 | Ubiquitin_Proteasome_system, DUB: JAMM negative regulation of innate immune response petal formation negative regulation of cell proliferation mRNA polyadenylation leaf development proteasome complex mRNA surveillance pathway Proteasome polynucleotide adenylyltransferase activity proteasome-mediated ubiquitin-dependent protein catabolic process | details |
| TreatCFM000903 | Transcription_related, Transcription factor: HB Glycosylphosphatidylinositol(GPI)-anchor biosynthesis GPI-anchor transamidase complex vesicle docking involved in exocytosis attachment of GPI anchor to protein chaperone-mediated protein folding amino acid transmembrane transport translational initiation RNA transport | details |
| TreatCFM000978 | proteasome complex Ubiquitin_Proteasome_system, DUB: JAMM Proteasome Transcription_related, Transcription regulator: PHD proteasome-mediated ubiquitin-dependent protein catabolic process | details |
| TreatCFM000980 | proteasome complex RNA-dependent DNA biosynthetic process RNA-directed DNA polymerase activity Ubiquitin_Proteasome_system, DUB: JAMM Proteasome DNA integration DNA recombination Transcription_related, Transcription factor: bHLH proteasome-mediated ubiquitin-dependent protein catabolic process | details |
| TreatCFM000981 | Ubiquitin_Proteasome_system, DUB: JAMM Proteasome proteasome complex intracellular part response to stimulus regulation of catalytic activity regulation of cellular process proteasome-mediated ubiquitin-dependent protein catabolic process | details |
| TreatCFM001043 | details | |
| TreatCFM001058 | details | |
| TreatCFM001084 | cullin deneddylation COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM | details |
| TreatCFM001185 | Insulin signaling pathway xylogalacturonan biosynthesis histone acetyltransferase activity exocyst histone acetylation exocytosis formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: C2H2 Ubiquitin_Proteasome_system, E3: U-box | details |
| TreatCFM001206 | Ubiquitin_Proteasome_system, DUB: JAMM cullin deneddylation COP9 signalosome nitrogen compound metabolic process hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds Phenylpropanoid biosynthesis plastid coenzyme binding transferase activity, transferring acyl groups | details |
| TreatCFM001316 | details | |
| TreatCFM001390 | riboflavin synthase activity Ubiquitin_Proteasome_system, DUB: JAMM proteasome complex Riboflavin metabolism Transcription_related, Transcription factor: bZIP Proteasome riboflavin biosynthetic process proteasome-mediated ubiquitin-dependent protein catabolic process | details |
| TreatCFM001424 | response to stimulus Transcription_related, Transcription regulator: ARID formation of glycosidic bonds, GlycosylTransferases: GTnc peroxidase activity | details |
| TreatCFM001704 | Ubiquitin_Proteasome_system, DUB: JAMM hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds RNA polymerase II transcription factor activity, sequence-specific DNA binding cullin deneddylation ribosomal large subunit assembly nitrogen compound metabolic process COP9 signalosome nucleoplasm transferase activity, transferring acyl groups | details |
| TreatCFM001804 | Ubiquitin_Proteasome_system, DUB: JAMM Transcription_related, Transcription regulator: LIM formation of translation preinitiation complex regulation of translational initiation eukaryotic 48S preinitiation complex eukaryotic translation initiation factor 3 complex proteasome complex eukaryotic 43S preinitiation complex proteasome-mediated ubiquitin-dependent protein catabolic process Homologous recombination Proteasome RNA transport | details |
| TreatCFM002133 | Various types of N-glycan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc Lewis a epitope biosynthetic process fucosylation xylogalacturonan biosynthesis Insulin signaling pathway Golgi cisterna membrane fucosyltransferase activity exocyst protein glycosylation exocytosis Ubiquitin_Proteasome_system, E3: U-box | details |
Expression profiles
 Show details about module gene expression profiling |