TreatCFM001689's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| CURI complex | 0.003036347 | GO:0032545 |
| UTP-C complex | 0.003036347 | GO:0034456 |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.005849767 | cazy family |
| diphthine synthase activity | 0.006436646 | GO:0004164 |
| peptidyl-diphthamide biosynthetic process from peptidyl-histidine | 0.007709663 | GO:0017183 |
| tRNA export from nucleus | 0.007709663 | GO:0006409 |
| Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) | 0.011350201 | kinase family |
| Transcription_related, Transcription regulator: SET | 0.011350201 | TF family |
| histone acetylation | 0.024386889 | GO:0016573 |
| histone acetyltransferase activity | 0.027325441 | GO:0004402 |
| MAPK signaling pathway - plant | 0.029024985 | KEGG pathway |
| Ribosome biogenesis in eukaryotes | 0.029024985 | KEGG pathway |
| small-subunit processome | 0.038976441 | GO:0032040 |
| rRNA processing | 0.039404155 | GO:0006364 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000496 | AT1G26760 (7.00E-08) | SDG35|SET domain protein 35 |
| CRO_T002476 | AT5G64610 (8.00E-43) | HAM1|histone acetyltransferase of the MYST family 1 |
| CRO_T005193 | AT5G25110 (1.00E-30) | CIPK25|CBL-interacting protein kinase 25; SnRK3.25|SNF1-RELATED PROTEIN KINASE 3.25 |
| CRO_T011784 | AT3G23640 (0) | HGL1|heteroglycan glucosidase 1 |
| CRO_T015088 | AT4G31790 (5.00E-131) | Tetrapyrrole (Corrin/Porphyrin) Methylases |
| CRO_T032078 | AT1G63810 (6.00E-87) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001441 | UTP-C complex CURI complex tRNA export from nucleus hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription regulator: SET glycosyl compound metabolic process rRNA processing RNA secondary structure unwinding Glycerolipid metabolism Ribosome biogenesis in eukaryotes small-subunit processome beta-glucosidase activity ATP-dependent RNA helicase activity | details |
| TreatCFM001481 | Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) MAPK signaling pathway - plant protein serine/threonine kinase activity protein phosphorylation peroxisome matrix targeting signal-1 binding phosphoric ester hydrolase activity phosphatidylinositol-3-phosphate biosynthetic process protein import into peroxisome matrix, docking 3-phosphoinositide biosynthesis Protein_kinases_phosphatases, PPC:1.10.1: Receptor Like Cytoplasmic Kinase VI Transcription_related, Transcription factor: SBP ATP binding vacuole organization Peroxisome peroxisomal membrane response to osmotic stress response to stress response to auxin | details |
| TreatCFM001561 | rRNA modification box C/D snoRNP complex snoRNA binding small-subunit processome Ribosome biogenesis in eukaryotes phosphatidylethanolamine biosynthesis I malate transmembrane transport malate transmembrane transporter activity histone acetyltransferase activity histone acetylation Glycerophospholipid metabolism lyase activity plant-type vacuole membrane lipid metabolic process | details |
| TreatCFM001613 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:4.5.4: GSK3/Shaggy Like Protein Kinase Family ErbB signaling pathway trans, trans-farnesyl diphosphate biosynthesis methylerythritol phosphate pathway I methylerythritol phosphate pathway II mevalonate pathway I cytosol nuclear-transcribed mRNA catabolic process peptidyl-diphthamide biosynthetic process from peptidyl-histidine positive regulation of ubiquitin-protein transferase activity regulation of mitotic cell cycle ubiquitin-like protein binding cullin family protein binding diphthine synthase activity SUMO activating enzyme activity protein neddylation histone acetyltransferase activity ubiquitin conjugating enzyme binding large ribosomal subunit rRNA binding lipase activity protein sumoylation Ubiquitin mediated proteolysis histone acetylation ribosomal large subunit assembly cytoplasmic translation | details |
| TreatCFM001688 | rRNA modification box C/D snoRNP complex snoRNA binding small-subunit processome Ribosome biogenesis in eukaryotes phosphatidylethanolamine biosynthesis I hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) histone acetylation Glycerophospholipid metabolism histone acetyltransferase activity MAPK signaling pathway - plant | details |
Expression profiles
 Show details about module gene expression profiling |