TreatCFM001855's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Cell cycle - Caulobacter | 0.004071992 | KEGG pathway |
| detoxification of reactive carbonyls in chloroplasts | 0.008227641 | plantCyc |
| traumatin and (Z)-3-hexen-1-yl acetate biosynthesis | 0.008227641 | plantCyc |
| cytosol | 0.024811185 | GO:0005829 |
| nuclear envelope | 0.024811185 | GO:0005635 |
| chaperone-mediated protein folding | 0.030492851 | GO:0061077 |
| cell wall organization or biogenesis | 0.030492851 | GO:0071554 |
| protein import into nucleus | 0.030492851 | GO:0006606 |
| protein peptidyl-prolyl isomerization | 0.030492851 | GO:0000413 |
| protein transporter activity | 0.033113739 | GO:0008565 |
| peptidyl-prolyl cis-trans isomerase activity | 0.033113739 | GO:0003755 |
| FK506 binding | 0.033113739 | GO:0005528 |
| O-acetyltransferase activity | 0.033113739 | GO:0016413 |
| serine-type endopeptidase activity | 0.049699918 | GO:0004252 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002504 | AT1G02560 (8.00E-19) | CLPP5|nuclear encoded CLP protease 5; NCLPP1|NUCLEAR-ENCODED CLPP 1; NCLPP5|NUCLEAR CLPP 5 |
| CRO_T009573 | AT1G20810 (8.00E-73) | FKBP-like peptidyl-prolyl cis-trans isomerase family protein |
| CRO_T023435 | AT2G21260 (2.00E-49) | NAD(P)-linked oxidoreductase superfamily protein |
| CRO_T028513 | AT1G67570 (1.00E-129) | Protein of unknown function (DUF3537) |
| CRO_T030389 | AT2G30900 (2.00E-103) | TBL43|TRICHOME BIREFRINGENCE-LIKE 43 |
| CRO_T030826 | AT3G59020 (1.00E-13) | ARM repeat superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000853 | Cell cycle - Caulobacter detoxification of reactive carbonyls in chloroplasts traumatin and (Z)-3-hexen-1-yl acetate biosynthesis Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase gluconeogenesis I nucleolar ribonuclease P complex calmodulin-dependent protein kinase activity ribonuclease P activity calcium-dependent protein serine/threonine kinase activity O-acetyltransferase activity peptidyl-serine phosphorylation protein autophosphorylation abscisic acid-activated signaling pathway gene silencing by RNA RNA phosphodiester bond hydrolysis, endonucleolytic cell wall organization or biogenesis | details |
| TreatCFM000854 | gluconeogenesis I Cell cycle - Caulobacter Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase gene expression cellular nitrogen compound biosynthetic process cellular macromolecule biosynthetic process calmodulin-dependent protein kinase activity calcium-dependent protein serine/threonine kinase activity peptidyl-serine phosphorylation protein autophosphorylation abscisic acid-activated signaling pathway primary metabolic process intracellular organelle Spliceosome calmodulin binding serine-type endopeptidase activity | details |
| TreatCFM001239 | starch biosynthesis glucose-1-phosphate adenylyltransferase activity positive regulation of proteasomal ubiquitin-dependent protein catabolic process starch biosynthetic process glycogen biosynthetic process Hedgehog signaling pathway protein ubiquitination involved in ubiquitin-dependent protein catabolic process protein polyubiquitination biosynthetic process ubiquitin ligase complex ubiquitin conjugating enzyme binding Cell cycle - Caulobacter Ubiquitin_Proteasome_system, E3 adaptor: BTB | details |
| TreatCFM001294 | phosphatidylinositol binding regulation of barrier septum assembly hypoxanthine salvage inosine biosynthetic process adenosine catabolic process histidinol dehydrogenase activity flavin-linked sulfhydryl oxidase activity regulation of ruffle assembly Ubiquitin_Proteasome_system, E3: HECT Transcription_related, Transcription regulator: mTERF ATPase binding adenosine deaminase activity detoxification of reactive carbonyls in chloroplasts L-histidine biosynthesis traumatin and (Z)-3-hexen-1-yl acetate biosynthesis protein metabolic process chloroplast fission histidine biosynthetic process endosome organization trichome branching protein histidine kinase binding | details |
| TreatCFM001412 | formation of glycosidic bonds, GlycosylTransferases: GTnc Cell cycle - Caulobacter Transcription_related, Transcription factor: bZIP chaperone-mediated protein folding protein peptidyl-prolyl isomerization FK506 binding peptidyl-prolyl cis-trans isomerase activity serine-type endopeptidase activity | details |
| TreatCFM001452 | UDP-N-acetyl-D-glucosamine biosynthesis II mRNA guanylyltransferase activity glutamine-fructose-6-phosphate transaminase (isomerizing) activity polynucleotide 5'-phosphatase activity serine-type endopeptidase activity serine-type exopeptidase activity 7-methylguanosine mRNA capping UDP-N-acetylglucosamine metabolic process carbohydrate derivative biosynthetic process polynucleotide 5' dephosphorylation proteolysis DNA ligation voltage-gated chloride channel activity protein tyrosine/serine/threonine phosphatase activity DNA ligase (ATP) activity Renin-angiotensin system chloride transport fructose 6-phosphate metabolic process cellular macromolecule biosynthetic process regulation of anion transmembrane transport Cell cycle - Caulobacter peptidyl-tyrosine dephosphorylation protein tyrosine phosphatase activity DNA recombination unidimensional cell growth DNA metabolic process ion transmembrane transport nucleotidyltransferase activity Amino sugar and nucleotide sugar metabolism mRNA surveillance pathway DNA repair | details |
| TreatCFM001483 | formation of glycosidic bonds, GlycosylTransferases: GTnc Ubiquitin_Proteasome_system, E1: ThiF beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity flavin-linked sulfhydryl oxidase activity ubiquitin activating enzyme activity detoxification of reactive carbonyls in chloroplasts traumatin and (Z)-3-hexen-1-yl acetate biosynthesis modification-dependent protein catabolic process ribosomal large subunit binding protein N-linked glycosylation protein disulfide isomerase activity integral component of Golgi membrane ribosome binding N-Glycan biosynthesis Ubiquitin mediated proteolysis cytosol extracellular space ATPase activity | details |
| TreatCFM001638 | Protein_kinases_phosphatases, PPC:2.2.1: Unknown Function Kinase Cell cycle - Caulobacter Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family protein kinase activity | details |
| TreatCFM001945 | Ubiquitin_Proteasome_system, E3: HECT DNA endoreduplication trichome branching Cell cycle - Caulobacter Ubiquitin mediated proteolysis protein ubiquitination involved in ubiquitin-dependent protein catabolic process plasma membrane | details |
| TreatCFM002071 | phosphatidylinositol-mediated signaling proteolysis protein initiator methionine removal metalloaminopeptidase activity 1-phosphatidylinositol 4-kinase activity phosphatidylinositol dephosphorylation hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 cytosolic ribosome Cell cycle - Caulobacter Inositol phosphate metabolism phosphatidylinositol phosphorylation 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis D-myo-inositol (1,4,5)-trisphosphate degradation homogalacturonan degradation protein peptidyl-prolyl isomerization peptidyl-prolyl cis-trans isomerase activity protein folding | details |
| TreatCFM002127 | DNA ligation polynucleotide 5' dephosphorylation 7-methylguanosine mRNA capping mRNA guanylyltransferase activity polynucleotide 5'-phosphatase activity Cell cycle - Caulobacter DNA ligase (ATP) activity protein tyrosine/serine/threonine phosphatase activity cellular macromolecule biosynthetic process mRNA surveillance pathway peptidyl-tyrosine dephosphorylation DNA recombination protein tyrosine phosphatase activity DNA metabolic process nucleotidyltransferase activity proteasome-mediated ubiquitin-dependent protein catabolic process DNA repair | details |
Expression profiles
 Show details about module gene expression profiling |