TreatCFM001621's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| cytoplasmic ribonucleoprotein granule | 0.001950499 | GO:0036464 |
| AMPK signaling pathway | 0.004071992 | KEGG pathway |
| vesicle docking involved in exocytosis | 0.018045239 | GO:0006904 |
| protein secretion | 0.018045239 | GO:0009306 |
| chromosome segregation | 0.018045239 | GO:0007059 |
| regulation of gene expression | 0.021417641 | GO:0010468 |
| small-subunit processome | 0.028165457 | GO:0032040 |
| rRNA processing | 0.030761303 | GO:0006364 |
| RNA secondary structure unwinding | 0.030761303 | GO:0010501 |
| translational initiation | 0.032773545 | GO:0006413 |
| Ubiquitin_Proteasome_system, E3 adaptor: DWD | 0.035293061 | ubs family |
| small GTPase mediated signal transduction | 0.037629009 | GO:0007264 |
| protein dephosphorylation | 0.04386362 | GO:0006470 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T013586 | AT1G48630 (3.00E-16) | RACK1B|receptor for activated C kinase 1B |
| CRO_T015761 | AT1G51580 (1.00E-18) | RNA-binding KH domain-containing protein |
| CRO_T018061 | AT5G59840 (2.00E-64) | Ras-related small GTP-binding family protein |
| CRO_T022565 | AT5G60990 (7.00E-31) | DEA(D/H)-box RNA helicase family protein |
| CRO_T030630 | AT2G46920 (2.00E-19) | POL|poltergeist |
| CRO_T033493 | AT1G09820 (4.00E-16) | Pentatricopeptide repeat (PPR-like) superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001159 | 5-aminoimidazole ribonucleotide biosynthesis I cytoplasmic ribonucleoprotein granule phosphoribosylformylglycinamidine cyclo-ligase activity AMPK signaling pathway protein secretion malate transmembrane transport chromosome segregation vesicle docking involved in exocytosis 'de novo' IMP biosynthetic process regulation of gene expression | details |
| TreatCFM001279 | UMP biosynthesis I dihydroorotate dehydrogenase activity hydroxymethyl-, formyl- and related transferase activity formyltetrahydrofolate deformylase activity Glyoxylate and dicarboxylate metabolism protein refolding regulation of leaf development pyrimidine ribonucleotide biosynthetic process 'de novo' IMP biosynthetic process 'de novo' pyrimidine nucleobase biosynthetic process Transcription_related, Transcription factor: TCP Pyrimidine metabolism mitochondrion amino acid binding RNA degradation | details |
| TreatCFM001304 | Cytochrome_P450, Cytochrome P450: CYP94D dihydroneopterin aldolase activity hydroxymethyl-, formyl- and related transferase activity cyanoalanine nitrilase activity formyltetrahydrofolate deformylase activity 3-cyanoalanine hydratase activity folic acid biosynthetic process cyanide catabolic process detoxification of nitrogen compound Glyoxylate and dicarboxylate metabolism tetrahydrofolate biosynthetic process 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I cyanide detoxification I L-asparagine degradation I Cyanoamino acid metabolism Folate biosynthesis 'de novo' IMP biosynthetic process aromatase activity superpathway of aspartate and asparagine biosynthesis tetrahydrofolate biosynthesis II snoRNA binding rRNA processing amino acid binding | details |
| TreatCFM001622 | cytoplasmic ribonucleoprotein granule hydroxymethyl-, formyl- and related transferase activity all-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate specific) activity trans-octaprenyltranstransferase activity formyltetrahydrofolate deformylase activity dihydroneopterin aldolase activity Glyoxylate and dicarboxylate metabolism heptaprenyl diphosphate biosynthesis hexaprenyl diphosphate biosynthesis nonaprenyl diphosphate biosynthesis I nonaprenyl diphosphate biosynthesis II octaprenyl diphosphate biosynthesis superpathway of plastoquinol biosynthesis heptaprenyl diphosphate synthase activity 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I Folate biosynthesis polyisoprenoid biosynthesis geranylgeranyl diphosphate biosynthesis superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) folic acid biosynthetic process tetrahydrofolate biosynthesis II chromosome segregation tetrahydrofolate biosynthetic process 'de novo' IMP biosynthetic process small-subunit processome snoRNA binding regulation of gene expression isoprenoid biosynthetic process Terpenoid backbone biosynthesis rRNA processing RNA secondary structure unwinding translational initiation amino acid binding Ubiquitin_Proteasome_system, E3 adaptor: DWD Photosynthesis ATP-dependent RNA helicase activity | details |
Expression profiles
 Show details about module gene expression profiling |