TreatCFM001751's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.006820393 | cazy family |
| Ubiquitin_Proteasome_system, E3: HECT | 0.006820393 | ubs family |
| histone ubiquitination | 0.009147335 | GO:0016574 |
| DNA endoreduplication | 0.009147335 | GO:0042023 |
| innate immune response | 0.009147335 | GO:0045087 |
| chloride transport | 0.009147335 | GO:0006821 |
| glycosaminoglycan biosynthetic process | 0.009147335 | GO:0006024 |
| heparan sulfate proteoglycan biosynthetic process | 0.009147335 | GO:0015012 |
| protein monoubiquitination | 0.009147335 | GO:0006513 |
| actin filament depolymerization | 0.009147335 | GO:0030042 |
| trichome branching | 0.009147335 | GO:0010091 |
| reproductive structure development | 0.010288927 | GO:0048608 |
| glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity | 0.011262632 | GO:0001888 |
| glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity | 0.012506271 | GO:0050508 |
| voltage-gated chloride channel activity | 0.012506271 | GO:0005247 |
| Regulation of actin cytoskeleton | 0.014865034 | KEGG pathway |
| regulation of anion transmembrane transport | 0.014957753 | GO:1903959 |
| post-embryonic development | 0.017988071 | GO:0009791 |
| Transcription_related, Transcription factor: C3H | 0.019257755 | TF family |
| ion transmembrane transport | 0.026852308 | GO:0034220 |
| Ubiquitin mediated proteolysis | 0.028625431 | KEGG pathway |
| actin cytoskeleton | 0.030387138 | GO:0015629 |
| single-organism cellular process | 0.033494498 | GO:0044763 |
| protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 0.033494498 | GO:0042787 |
| actin binding | 0.033586439 | GO:0003779 |
| metal ion binding | 0.033586439 | GO:0046872 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002206 | AT3G55830 (2.00E-104) | EPC1|ECTOPICALLY PARTING CELLS |
| CRO_T003497 | - | - |
| CRO_T007408 | AT1G21580 (2.00E-138) | Zinc finger C-x8-C-x5-C-x3-H type family protein |
| CRO_T025191 | AT4G38600 (0) | KAK|KAKTUS; UPL3|UBIQUITIN-PROTEIN LIGASE 3 |
| CRO_T030251 | AT1G55250 (1.00E-27) | HUB2|histone mono-ubiquitination 2 |
| CRO_T030828 | AT3G46010 (1.00E-59) | ADF1|actin depolymerizing factor 1 |
| CRO_T031452 | AT5G26240 (1.00E-91) | CLC-D|chloride channel D |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000155 | dTTP biosynthetic process dTDP biosynthetic process dUDP biosynthetic process positive regulation of autophagy response to extracellular stimulus thymidylate kinase activity organ morphogenesis pyrimidine deoxyribonucleotide phosphorylation pyrimidine deoxyribonucleotides de novo biosynthesis II superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) pyrimidine deoxyribonucleotides de novo biosynthesis I regulation of root development lateral root development reactive oxygen species metabolic process endoplasmic reticulum unfolded protein response fruit development RNA biosynthetic process defense response to fungus, incompatible interaction uridylate kinase activity endoplasmic reticulum heterotrimeric G-protein complex negative regulation of abscisic acid-activated signaling pathway Cul4-RING E3 ubiquitin ligase complex Transcription_related, Transcription factor: AP2 Transcription_related, Transcription regulator: mTERF histone acetyltransferase activity histone acetylation Pyrimidine metabolism Ras signaling pathway jasmonic acid mediated signaling pathway response to ethylene phosphoprotein phosphatase activity DNA-directed RNA polymerase activity | details |
| TreatCFM000355 | response to far red light heparan sulfate proteoglycan biosynthetic process positive regulation of biological process red or far-red light signaling pathway glycosaminoglycan biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity core promoter sequence-specific DNA binding glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity transcription from RNA polymerase II promoter transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding poly(A) RNA binding Spliceosome RNA processing Transcription_related, Transcription factor: FAR1 ATP-dependent RNA helicase activity | details |
| TreatCFM000451 | L-arginine degradation VI (arginase 2 pathway) L-proline biosynthesis I L-proline biosynthesis III L-proline biosynthetic process glucosylceramide catabolic process hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:1.2.1: Receptor Like Cytoplasmic Kinase VIII Ubiquitin_Proteasome_system, E3 adaptor: Cullin pyrroline-5-carboxylate reductase activity glucosylceramidase activity protein phosphorylation microtubule-based process Phagosome Sphingolipid metabolism protein ubiquitination involved in ubiquitin-dependent protein catabolic process Transcription_related, Transcription factor: C3H cullin-RING ubiquitin ligase complex Biosynthesis of amino acids Plant-pathogen interaction Ubiquitin mediated proteolysis Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII structural constituent of cytoskeleton | details |
| TreatCFM001153 | 3-hydroxyacyl-CoA dehydrogenase activity unsaturated, even numbered fatty acid β-oxidation fatty acid β-oxidation II (peroxisome) fatty acid metabolic process Fatty acid metabolism very long chain fatty acid biosynthesis II Valine, leucine and isoleucine degradation innate immune response protein monoubiquitination histone ubiquitination cytidine to uridine editing leucine catabolic process L-leucine degradation I reproductive structure development SCF-dependent proteasomal ubiquitin-dependent protein catabolic process post-embryonic development jasmonic acid biosynthesis cobalt ion binding SCF ubiquitin ligase complex | details |
| TreatCFM001372 | Glucagon signaling pathway DNA endoreduplication glycosaminoglycan biosynthetic process trichome branching heparan sulfate proteoglycan biosynthetic process Cell cycle formation of glycosidic bonds, GlycosylTransferases: GTnc Ubiquitin_Proteasome_system, E3: HECT transcriptional repressor complex glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity Transcription_related, Transcription factor: MYB-related Ubiquitin mediated proteolysis protein ubiquitination involved in ubiquitin-dependent protein catabolic process | details |
| TreatCFM001382 | pyrimidine ribonucleosides salvage I Protein_kinases_phosphatases, PPC:1.8.1: Leucine Rich Repeat Kinase I intracellular positive regulation of autophagy RNA biosynthetic process activation of MAPKK activity oxidized purine nucleobase lesion DNA N-glycosylase activity MAPK cascade cytosolic small ribosomal subunit MAP kinase kinase kinase activity damaged DNA binding small GTPase mediated signal transduction DNA repair | details |
| TreatCFM001472 | Transcription_related, Transcription factor: DBP flavin biosynthesis I (bacteria and plants) endoplasmic reticulum actin cytoskeleton actin filament depolymerization Transcription_related, Transcription factor: HB Regulation of actin cytoskeleton cell membrane part | details |
| TreatCFM001541 | ligase activity Glucagon signaling pathway Toll and Imd signaling pathway transcriptional repressor complex glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity postreplication repair heparan sulfate proteoglycan biosynthetic process glycosaminoglycan biosynthetic process protein K63-linked ubiquitination Cell cycle glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Ubiquitin_Proteasome_system, E3: HECT Transcription_related, Transcription factor: MYB-related Ubiquitin_Proteasome_system, E2: UBC ubiquitin protein ligase binding Ubiquitin mediated proteolysis | details |
| TreatCFM001625 | Regulation of actin cytoskeleton histone-arginine N-methyltransferase activity protein-arginine omega-N asymmetric methyltransferase activity actin cytoskeleton Protein_kinases_phosphatases, PPC:3.1.1: Casein Kinase I Family protein serine/threonine kinase activity actin filament depolymerization peptidyl-arginine methylation Wnt signaling pathway regulation of cell shape Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family Endocytosis actin binding peptidyl-serine phosphorylation Transcription_related, Transcription factor: HB Ubiquitin_Proteasome_system, E3: U-box | details |
| TreatCFM001638 | Protein_kinases_phosphatases, PPC:2.2.1: Unknown Function Kinase Cell cycle - Caulobacter Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family protein kinase activity | details |
| TreatCFM001752 | Protein_kinases_phosphatases, PPC:2.2.1: Unknown Function Kinase Protein_kinases_phosphatases, PPC:1.2.1: Receptor Like Cytoplasmic Kinase VIII histone ubiquitination protein monoubiquitination innate immune response reproductive structure development chloride transport Plant-pathogen interaction regulation of anion transmembrane transport protein phosphorylation post-embryonic development voltage-gated chloride channel activity ion transmembrane transport single-organism cellular process | details |
| TreatCFM001945 | Ubiquitin_Proteasome_system, E3: HECT DNA endoreduplication trichome branching Cell cycle - Caulobacter Ubiquitin mediated proteolysis protein ubiquitination involved in ubiquitin-dependent protein catabolic process plasma membrane | details |
Expression profiles
 Show details about module gene expression profiling |