TreatCFM001643's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| maintenance of protein location in nucleus | 0.004290463 | GO:0051457 |
| bundle sheath cell fate specification | 0.004290463 | GO:0090610 |
| asymmetric cell division | 0.004290463 | GO:0008356 |
| radial pattern formation | 0.004826058 | GO:0009956 |
| gravitropism | 0.005147034 | GO:0009630 |
| leaf development | 0.012317776 | GO:0048366 |
| nucleus | 0.013622478 | GO:0005634 |
| Transcription_related, Transcription factor: GRAS | 0.014979899 | TF family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T015077 | AT1G10800 (6.00E-16) | unknown protein |
| CRO_T016999 | - | - |
| CRO_T026105 | AT1G66350 (2.00E-59) | RGL1|RGA-like 1 |
| CRO_T026590 | AT4G24840 (1.00E-112) | unknown protein |
| CRO_T028186 | AT3G07460 (3.00E-37) | Protein of unknown function, DUF538 |
| CRO_T029443 | AT4G04890 (1.00E-10) | PDF2|protodermal factor 2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000108 | details | |
| TreatCFM000212 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc catabolic process macromolecule metabolic process sulfate transmembrane transport secondary active sulfate transmembrane transporter activity hydrolase activity, acting on glycosyl bonds plant-type cell wall organization Amino sugar and nucleotide sugar metabolism | details |
| TreatCFM000360 | radial pattern formation bundle sheath cell fate specification regulation of cellular metabolic process maintenance of protein location in nucleus asymmetric cell division gravitropism glyoxylate cycle TCA cycle II (plants and fungi) Transcription_related, Transcription factor: GRAS gluconeogenesis I malate metabolic process leaf development tricarboxylic acid cycle L-malate dehydrogenase activity | details |
| TreatCFM001165 | Carbon metabolism formate-tetrahydrofolate ligase activity folic acid-containing compound biosynthetic process folate polyglutamylation folate transformations II L-valine degradation I tetrahydrofolate biosynthesis II methylmalonate-semialdehyde dehydrogenase (acylating) activity vindoline and vinblastine biosynthesis Endocytosis small GTPase mediated signal transduction oxidation-reduction process membrane | details |
| TreatCFM001211 | protein insertion into membrane Protein_kinases_phosphatases, PPC:1.7.2: Domain of Unknown Function 26 (DUF26) Kinase Transcription_related, Transcription regulator: HMG Protein export | details |
| TreatCFM001525 | anthocyanidin modification (Arabidopsis) anthocyanin biosynthesis anthocyanin biosynthesis (delphinidin 3-O-glucoside) anthocyanin biosynthesis (pelargonidin 3-O-glucoside) cellulose biosynthesis quercetin glucoside biosynthesis (Allium) quercetin gentiotetraside biosynthesis plant-type secondary cell wall biogenesis microtubule cytoskeleton organization cytokinesis response to osmotic stress defense response to fungus cellulose biosynthetic process response to water deprivation defense response to bacterium multicellular organism development formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) | details |
| TreatCFM001862 | Protein_kinases_phosphatases, PPC:1.5.2: LRK10 Like Kinase (Type 1) NF-kappa B signaling pathway Endocytosis proton transport glucose import glucose transmembrane transport small GTPase mediated signal transduction secondary metabolite biosynthetic process | details |
Expression profiles
 Show details about module gene expression profiling |